Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90782g00026 ATGGTGAACAACCAAAAGGATCAACATGGGCCTTCAAAACAACCTCTTTCAGAGCCTTTTCCGGTGGGTATGCGTGTTCTTGCTGTAGACGATGATCGAGTTTGTCTCAGAACATTGGAGCAGATGCTCATAAAATGCCGTTATAATGTTACTGCTACAACTCAATCAAGAAAAGCAATAGAGATGCTAAGGGAAAACAAAGACAAATTTGACCTTATTATAAGTGATGTTATTATGCCAGACATTGATGGCTTTAAGCTTCTTGAACTAGTGGGACATGAGATGGACCTACCAGTTATAATGGTGACAGAACACAAGGAGCCAAATCTGGTGAAGAAGGGTGTTGTGCATGGGGCATGTGACTATTTGCTGAAACCGGTTAGAATGGAAGAATTACAGATCATATGGAGACATGTATTTAGAAGGAAGGTAGATTCCAAGGATCACAAGGAATGCAATGTGGTAATAGAAAATTGTGCTGACCATGATAATAAAAGGTTGGATAAAAGAAGGAGGGAACAATCTGTAGAGGAGGAAGAAGATGCTGATGATTATGAACAAGAGAATGAGAGTGCTTCTACTCATAAGAAGCCTCGTTTGGTGTGGGGTGATGAGCTGCGTAGGAAATTCCAAGCTGCAGTAAACCAACTGGGCCATGATAAAGCTGTTCCTAAGAAAATTCTTGAACTGATGAATGTGGAAGGGATCACAAGGGAAAATGTGGCAAGCCATCTTCAGAAATACAGGATGAATCTAAGAAGGGCAGCTCAACAAGGTAGAACAGTTGTTGCATCTGATCCTTACTTGCATTTGCATATGCCTTTGCTGGATCCGTATGTATCCGGATCAAGAAGCCTCCCAACCACCGCAATGACATCATATGCATCCGGTGGAATCTTTTCAAGGCTGCACTCCTCACACGCCTTCAACTTGAGAGGAATGAGTTCTTCTTTGCTAGCTCGGCCGGTCGACTCCATAAAAGGACTCGGCAACATCCAGCCCACCATTTTCTCCGCAAATCAAAGCTCCAACTTTATGCAGGGAATTCCAGCAGCAAATGAACTAAACCATTTTCAACAGTATAACTATGCAACTGGTATTAGGCTGTTGAACCCAGCTGATATATCAAGTGATAATGCTTTATCTGGATTCACAAGTAATAATTCAGCGTTACAAGGAAATTATCCCGCAACTCATCATTTGAATTCATTAAGAAATCATTCTCCTCTAGAAGCTGCTTATGTGAGAGCAGAGCAGAATGAGGCTACTCTTTCGGTCAACCACAACCAGAACAGTAAAGTTGAGAATGCCTGCATTTTGCAAGAGTGTGACTTGGATCCTTTGGGAATGATATTTGATGCTGACTATACTATTGGATCATGCATCTAA 1389 0.4168 MVNNQKDQHGPSKQPLSEPFPVGMRVLAVDDDRVCLRTLEQMLIKCRYNVTATTQSRKAIEMLRENKDKFDLIISDVIMPDIDGFKLLELVGHEMDLPVIMVTEHKEPNLVKKGVVHGACDYLLKPVRMEELQIIWRHVFRRKVDSKDHKECNVVIENCADHDNKRLDKRRREQSVEEEEDADDYEQENESASTHKKPRLVWGDELRRKFQAAVNQLGHDKAVPKKILELMNVEGITRENVASHLQKYRMNLRRAAQQGRTVVASDPYLHLHMPLLDPYVSGSRSLPTTAMTSYASGGIFSRLHSSHAFNLRGMSSSLLARPVDSIKGLGNIQPTIFSANQSSNFMQGIPAANELNHFQQYNYATGIRLLNPADISSDNALSGFTSNNSALQGNYPATHHLNSLRNHSPLEAAYVRAEQNEATLSVNHNQNSKVENACILQECDLDPLGMIFDADYTIGSCI 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90782g00026 462 NCBIfam myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Stsc90782g00026 462 SUPERFAMILY Homeodomain-like 194 254 IPR009057 -
Stsc90782g00026 462 MobiDBLite consensus disorder prediction 169 197 - -
Stsc90782g00026 462 PIRSF RR_ARR_type-B 1 446 IPR017053 GO:0003677|GO:0003700|GO:0009736
Stsc90782g00026 462 Gene3D - 193 255 - -
Stsc90782g00026 462 SMART REC_2 24 136 IPR001789 GO:0000160
Stsc90782g00026 462 Coils Coil 175 195 - -
Stsc90782g00026 462 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 337 IPR045279 GO:0009736
Stsc90782g00026 462 FunFam Two-component response regulator 193 256 - -
Stsc90782g00026 462 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Stsc90782g00026 462 Pfam Response regulator receiver domain 26 133 IPR001789 GO:0000160
Stsc90782g00026 462 CDD REC_typeB_ARR-like 26 140 - -
Stsc90782g00026 462 Gene3D - 23 158 - -
Stsc90782g00026 462 SUPERFAMILY CheY-like 23 148 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90782g00026 Stsc-Chr90782 74166 75960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90782g00026 20 362 Response Regulator Gene Family AT2G25180 45.902 2.63e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Stsc90782g00026 Response_reg 2.5e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90782g00026 K14491 - gmx:100776075 402.519