Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90782g00006 ATGGCTTCGGGTGACATCTCTTTTGAGGATCTTAAGAATGAGAATGTGGACCTCGAGAACACTCCTATTGAGGACGTATTCAAGCAACTGAAATGCAGCAGAGAGGGATTGACATCAGCTGAAGGAGAGAAGAGGCTACATATCTTCGGTTACAACAAACTGGAAGAGAAAAAGGAAAGCAAGCTGCTTAAATTCTTGGGTTTCATGTGGAATCCATTGTCATGGGTCATGGAGGCTGCTGCAATCATGGCCATTGCATTGGCCAATGGAGGGGGCAAGCCACCGGATTGGCAAGATTTCCTTGGTATTGTGGTGTTGCTTCTCATCAACTCAACGATTAGTTTCATTGAGGAAAACAGTGCAGGCAATGCTGCAGCAGCTTTGATGGCTGGTCTTGCACCCAAAACCAAGGTGTTGAGAGATGGAAAATGGAGTGAGCAAGAAGCTTCAATCTTGGTGCCAGGAGATTTAATCAGCATCAAGTTAGGAGACATCGTCCCGGCCGATGCTCGTCTTTTGGAAGGTGATCCTCTAAAGATTGACCAAGCTGCCCTCACTGGTGAGTCATTGCCAGTCACCAAGAACCCTGGTGATGAGGTCTTCTCTGGTTCCACATGCAAACAAGGTGAGATTGAGGCTGTTGTCATTGCCACCGGAGTCCACACCTTCTTTGGCAAGGCTGCTCATCTTGTTGACAGCACCAACAATGTTGGTCACTTCCAACAGGTGTTGACTGCCATTGGTAACTTCTGCATCTGTTCAATTGCTGTGGGAATGATAATTGAGATTATTGTGGTGTTTCCCATCCAACAAAGGGCATACAGAGATGGTATTGATAACTTGTTGGTTCTTCTCATTGGTGGTATCCCAATTGCCATGCCAACTGTCTTGTCTGTCACCATGGCTATTGGCTCTCACCGCCTTTCCCAGCAAGGAGCCATCACCAAGAGGATGACTGCCATTGAAGAAATGGCAGGTATGGATGTTCTCTGCAGTGACAAGACTGGAACTCTCACCCTTAACAAGCTTACCGTTGACAAGGACTTGATTGAGGTCTTCCCCTCTAATGTAGATAGGGATACTCTTGTCTTGTATGCTGCCAGGGCTTCCAGGGTTGAAAACCAGGATGCCATTGATGCTTCAATTGTTGGAATGTTGAGTGACCCCAAGGAGGCAAGAGCAGGAATCACTGAGGTGCATTTCTTGCCTTTCAATCCTGTGGAGAAGCGCACAGCCAATACCTACATTGATAGCAATGGAGACTGGCACAGAAGCAGCAAGGGTGCTCCTGAGCAAATTATTGAACTGTGTAACCTCAAGGGAGAGACTTTGAAGAAGGCTCATGAGATCATTGATGACTTTGCTAACCGCGGTCTACGTGCATTGGGAGTTGCGCGCCAGACTGTTTCCGCAAAGTGCAAGGAGAGTGAAGGAGAACCATGGGAATTCTTGGGCTTGTTGCCTCTTTTTGACCCTCCAAGGCATGATAGTGCAGAGACTATCCGTCGTGCTCTTGACCTTGGTGTCAATGTTAAGATGATCACTGGTGACCAACTTGCCATTGGCAAAGAAACCGGTCGCAGGCTCGGAATGGGAACCAACATGTACCCTTCATCCTCCCTCCTTGGTGCTAGCAAAGACCCTTCCATTGCATCCATTCCAATTGATGAACTCATTGAAAAGGCTGACGGGTTCGCCGGAGTGTTCCCAGAACACAAATATGAGATTGTGAAGAGGCTACAGGATAAGAAACACATTGTAGGCATGACTGGAGATGGTGTGAACGATGCACCGGCACTTAAGAAGGCAGATATTGGAATTGCCGTGGCGGATGCAACTGATGCTGCAAGGAGTGCCTCAGACATTGTTTTGACAGAGCCTGGGCTTAGTGTGATTGTGAGTGCTGTGCTTACAAGCAGGGCTATCTTCCAGAGGATGAAGAACTACACCATCTATGCTGTTTCCATTACCATCCGTATTGTTTTTGGATTCATGCTTGTGGCTCTCATCTGGAAGTTTGATTTCTCACCTTTCATGGTCCTAGTCATTGCCATCTTGAACGATGGAACCATCATGACCATCTCCAAGGATCGGGTCAAGCCATCTCCTCTCCCTGACTCATGGAAGCTCAAGGAAATCTTCGCCACCGGCATTGTCCTTGGACTATACATGGCTGTCACCACTGCCTTGTTCTTCTACCTCATCCATGACACCAACTTCTTCACCAATTCCTTCAATGTTGTGCCACTCCAGGATAGTGAGGAGCAACTGAACTCAGCTCTGTACCTTCAAGTGAGTATCATTAGCCAAGCACTCATCTTCGTGACAAGATCAAGAGGCTGGTCCTATGCTGAACGCCCTGGATTGTTGCTTGTTGTAGCCTTCATTGCAGCACAGCTGGTGGCAACTTTGATTGCTGTGTATGCACACTGGGACTTCGCTAGAATACACGGAATCGGGTGGAAATGGGCAGGAGTAATCTGGATATTCAGCATTGTGACATACATCCCTCTTGATATCCTAAAGTTCTTGACAAGGTTGGGGCTGTCAGGAAGGGCATGGGACAATGTGATTGACAACAAGACTGCATTCACAACAAAGAAGGATTATGGAAAAGGAGAGAGGGAAGCTCAATGGGTTATGGCTCAGAGGTCAATGCATGGACTGCAGGTTTCTGAGAGCCCAAGAGGGTCAGCAGCCAACGGGAGTGAGCAGTCTGAAATAGCTGAGCAGGCAAGGAAACGTGCTGAGGCTGCAAGGCTGAGAGAACTCCACACTCTCAAGGGTCATGTTCAATCTGTAGCCAAGTTGAAGGGTCTTGACATTGATACCAACCAACAACATTACACGCTTTAA 2856 0.4762 MASGDISFEDLKNENVDLENTPIEDVFKQLKCSREGLTSAEGEKRLHIFGYNKLEEKKESKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFLGIVVLLLINSTISFIEENSAGNAAAALMAGLAPKTKVLRDGKWSEQEASILVPGDLISIKLGDIVPADARLLEGDPLKIDQAALTGESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNNVGHFQQVLTAIGNFCICSIAVGMIIEIIVVFPIQQRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKDLIEVFPSNVDRDTLVLYAARASRVENQDAIDASIVGMLSDPKEARAGITEVHFLPFNPVEKRTANTYIDSNGDWHRSSKGAPEQIIELCNLKGETLKKAHEIIDDFANRGLRALGVARQTVSAKCKESEGEPWEFLGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGASKDPSIASIPIDELIEKADGFAGVFPEHKYEIVKRLQDKKHIVGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLVALIWKFDFSPFMVLVIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGIVLGLYMAVTTALFFYLIHDTNFFTNSFNVVPLQDSEEQLNSALYLQVSIISQALIFVTRSRGWSYAERPGLLLVVAFIAAQLVATLIAVYAHWDFARIHGIGWKWAGVIWIFSIVTYIPLDILKFLTRLGLSGRAWDNVIDNKTAFTTKKDYGKGEREAQWVMAQRSMHGLQVSESPRGSAANGSEQSEIAEQARKRAEAARLRELHTLKGHVQSVAKLKGLDIDTNQQHYTL 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90782g00006 951 MobiDBLite consensus disorder prediction 892 912 - -
Stsc90782g00006 951 PRINTS H+-transporting ATPase (proton pump) signature 762 783 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc90782g00006 951 PRINTS H+-transporting ATPase (proton pump) signature 447 465 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc90782g00006 951 PRINTS H+-transporting ATPase (proton pump) signature 590 606 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc90782g00006 951 PRINTS H+-transporting ATPase (proton pump) signature 562 578 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc90782g00006 951 PRINTS H+-transporting ATPase (proton pump) signature 621 646 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc90782g00006 951 Gene3D - 134 218 - -
Stsc90782g00006 951 MobiDBLite consensus disorder prediction 892 907 - -
Stsc90782g00006 951 SFLD p-type atpase 313 642 IPR044492 -
Stsc90782g00006 951 SUPERFAMILY Calcium ATPase, transmembrane domain M 16 847 IPR023298 -
Stsc90782g00006 951 ProSitePatterns E1-E2 ATPases phosphorylation site. 333 339 IPR018303 -
Stsc90782g00006 951 SFLD Haloacid Dehalogenase 313 642 - -
Stsc90782g00006 951 FunFam Plasma membrane ATPase 484 638 - -
Stsc90782g00006 951 FunFam Plasma membrane ATPase 134 218 - -
Stsc90782g00006 951 Gene3D - 902 951 - -
Stsc90782g00006 951 CDD P-type_ATPase_H 36 843 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc90782g00006 951 Pfam Cation transporter/ATPase, N-terminus 21 83 IPR004014 -
Stsc90782g00006 951 NCBIfam plasma-membrane proton-efflux P-type ATPase 36 808 IPR006534 GO:0008553|GO:0016020|GO:0120029
Stsc90782g00006 951 NCBIfam HAD-IC family P-type ATPase 565 676 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc90782g00006 951 NCBIfam HAD-IC family P-type ATPase 103 347 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc90782g00006 951 PANTHER CALCIUM-TRANSPORTING ATPASE 21 884 - -
Stsc90782g00006 951 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Stsc90782g00006 951 PRINTS P-type cation-transporting ATPase superfamily signature 613 625 - -
Stsc90782g00006 951 PRINTS P-type cation-transporting ATPase superfamily signature 485 496 - -
Stsc90782g00006 951 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Stsc90782g00006 951 PRINTS P-type cation-transporting ATPase superfamily signature 590 609 - -
Stsc90782g00006 951 PRINTS P-type cation-transporting ATPase superfamily signature 507 517 - -
Stsc90782g00006 951 FunFam Plasma membrane ATPase 343 490 - -
Stsc90782g00006 951 Pfam haloacid dehalogenase-like hydrolase 327 604 - -
Stsc90782g00006 951 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
Stsc90782g00006 951 Gene3D - 343 490 IPR023299 GO:0000166
Stsc90782g00006 951 SUPERFAMILY HAD-like 327 637 IPR036412 -
Stsc90782g00006 951 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Stsc90782g00006 951 Pfam E1-E2 ATPase 133 310 - -
Stsc90782g00006 951 Gene3D - 96 817 - -
Stsc90782g00006 951 Gene3D - 328 627 IPR023214 -
Stsc90782g00006 951 FunFam ATPase 4 plasma membrane-type 577 817 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90782g00006 Stsc-Chr90782 12640 16405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90782g00006 5 951 Primary Pumps ATPases AT3G42640 83.105 0.0 1613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90782g00006 K01535 - gmx:100778065 1620.91