LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90781g00011	ATGATGCCAGAGATCGAACAAGCGCCGCCACACACGGCGACCGCAGCTACCACCTCCTCTTCCTCCGTCGCCTCCTCCTCCTCCTCCGCCTCCACCATCTCCGTCAGCAACGCATTATTCGGAAAATACGAGCTAGGAAGACTCCTAGGATGCGGCGCGTTCGCAAAGGTTTACTACGCGCGGAACGTGAGAACGATGCAGAGCGTGGCGATTAAGGTGATAAGCAAGAAGAAGATAATGGGAACGTCGCTGGTTTCGAACGTGAAGCGGGAGGTTTCGATCATGAGCAAGCTGAACCACCCGAACATCGTGAAGCTGCACGAGGTGCTGGCGACGAAGACGAAGATCTATTTCGTGTTGGAGTTCGTCAAAGGCGGTGAGCTATTTGCCAAGGTTTCCAAAGGCAGGTTCAGCGAGGATCTCAGCCGCAAGTATTTCCAGCAGCTTATCTCCGCCGTAGGGTACTGTCACTCGCGCGGCGTTTTCCACCGTGATTTGAAGCCCGAGAATCTCTTGCTTGATGAGAGTGGGAATCTTAAGGTCTCCGATTTTGGACTCAGTGCTGTCAAAGACCAGGTGAGGTTTGATGGGTTGTTGCACACGTTGTGTGGCACTCCAGCATATGTGGCACCGGAGATTCTGGCAAAGAAGGGCTATGACGGTGCAAAGGTTGATGTATGGTCTTGTGGGGTGATTCTCTTTGTCCTTGCAGCAGGGTACCTACCTTTCAATGATCCAAACTTGATGGTGATGTACAAGAAGATCTACAAGGGGGAGTACCGGTGTCCACGGTGGATGTCGCCGGATCTACGACGGTTCCTTTCGAGGGTGCTTGACACCAACCCTGAGACAAGGTTCACCGTTGATGAGATCACCAGGGACCCTTGGTTTAGAAAAGGCTACAAGGATATGAAGTTCCATGAGGATTGGAATCTTGGGTCCAAACTTGATGCTGAGGACAAGGTGAAGGAATTGAATGCTTTTGATATAATCTCATTCTCTTCAGGTTTGAATCTTTCTGGATTGTTTGTTGGTGGTGGCGCCTCCACATCAACGACTGTAGAGGATAGTGAGAGGCTCATGCTCAGGGGTTCAGTTGAGGGGGTTGTGTCTAGGGTGGAAGAGGTGGCTGTGGCAGAGGGGCTTTTAGCGAGAGGGATGAAAGAATGTGGTGTGGAGCTAGAGGGGCAAAATGGTAATTTTGGGTTTGTGGCTGAGGTTTGCCGGGTAACGGCCGACCTGGTTGTGGTGGAGGCAACAAGGAAAAGGGGGGATCCATTTGCATTTCGGGATATGTGGAGGAACAAATTGACACCTCAGCTTTTAAGTACTGCTACGACCAATAGCAGTACCGAATTAGCTGAGGCTGATCAAAATCAAACGGAGGAGATTTCCGAGTCCCAGCAGATTGCTAGTGACTGA	1422	0.5113	MMPEIEQAPPHTATAATTSSSSVASSSSSASTISVSNALFGKYELGRLLGCGAFAKVYYARNVRTMQSVAIKVISKKKIMGTSLVSNVKREVSIMSKLNHPNIVKLHEVLATKTKIYFVLEFVKGGELFAKVSKGRFSEDLSRKYFQQLISAVGYCHSRGVFHRDLKPENLLLDESGNLKVSDFGLSAVKDQVRFDGLLHTLCGTPAYVAPEILAKKGYDGAKVDVWSCGVILFVLAAGYLPFNDPNLMVMYKKIYKGEYRCPRWMSPDLRRFLSRVLDTNPETRFTVDEITRDPWFRKGYKDMKFHEDWNLGSKLDAEDKVKELNAFDIISFSSGLNLSGLFVGGGASTSTTVEDSERLMLRGSVEGVVSRVEEVAVAEGLLARGMKECGVELEGQNGNFGFVAEVCRVTADLVVVEATRKRGDPFAFRDMWRNKLTPQLLSTATTNSSTELAEADQNQTEEISESQQIASD	473

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90781g00011	473	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	161	173	IPR008271	GO:0004672\|GO:0006468
	Stsc90781g00011	473	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	29	421	-	-
	Stsc90781g00011	473	CDD	CIPK_C	326	441	-	-
	Stsc90781g00011	473	ProSiteProfiles	Protein kinase domain profile.	43	297	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc90781g00011	473	Gene3D	Phosphorylase Kinase; domain 1	32	122	-	-
	Stsc90781g00011	473	Pfam	Protein kinase domain	43	297	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc90781g00011	473	SUPERFAMILY	Protein kinase-like (PK-like)	40	309	IPR011009	-
	Stsc90781g00011	473	Pfam	NAF domain	323	382	IPR004041	GO:0007165
	Stsc90781g00011	473	FunFam	Non-specific serine/threonine protein kinase	34	327	-	-
	Stsc90781g00011	473	Gene3D	Kinase associated domain 1, KA1	321	445	-	-
	Stsc90781g00011	473	MobiDBLite	consensus disorder prediction	445	473	-	-
	Stsc90781g00011	473	FunFam	Non-specific serine/threonine protein kinase	34	122	-	-
	Stsc90781g00011	473	ProSiteProfiles	NAF domain profile.	320	344	IPR018451	GO:0007165
	Stsc90781g00011	473	SMART	serkin_6	43	297	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc90781g00011	473	Gene3D	Transferase(Phosphotransferase) domain 1	123	304	-	-
	Stsc90781g00011	473	MobiDBLite	consensus disorder prediction	1	27	-	-
	Stsc90781g00011	473	MobiDBLite	consensus disorder prediction	11	27	-	-
	Stsc90781g00011	473	ProSitePatterns	Protein kinases ATP-binding region signature.	49	72	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90781g00011	Stsc-Chr90781	80358	83229	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90781g00011	36	454	CBL-interacting serine-threonine protein kinases	AT2G30360	64.471	0.0	558

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Stsc90781g00011		Pkinase	1.5e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90781g00011	-		-	gmx:100799169	581.252