Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90781g00005 ATGGATAGCACAACAAATACCTTGATGCAAAGATATGAACTGGGAAGGTTACTAGGCCAAGGAACCTTTGGCAAGGTCTACTATGCGAGGAGTTCGATAACTAACCAGAGCGTTGCCATCAAAGTAATCGACAAGGATAAAGTTATTAGAACCGGGCAATGCGAGCGGATTAAGAGGGAAGTAACTATCATGAGACTAGTTCGTCATCCGTATATAATTCAGCTTCTTGAGATCATGGCCACCAAGAGCAAGATTTACTTTGTCATGGAGTATGCGAAAGGTGGCGAGCTTTTTGACTTGGTGGCCAAAGGGAAGCTCAAAGAAGATGATGCTCACAAGTACTTTAGGCAGCTCGTGAATGCAGTCGATTTCTGTCACAGCCGAGGCGTATACCATAGAGATATAAAGCCGGAGAATCTTCTGTTGGATGAGAATGAGGATCTTAAGGTTTCGGATTTTGGGTTGAGTGCTTTGGCCGAATCGAAAAGGAAGGATGGATTGCTGCATACAACTTGTGGAACTCCTTCCTATGTTGCCCCTGAAGTGATTAGAAGGAAAGGCTATGATGGTACAAAAGCAGATATTTGGTCCTGTGGAGTAGTTCTCTTTGTCCTATTGGCAGGCTATCTACCTTTTCATGATTCAAATTTGATTGAGATGTATAGAAAGATAAGCAAAGGCGAATTCACTTGTCCGAGTTGGTTCCCGAACAATGTCCGGCGGCTATTGTGCAAGATGTTGGATCCAGATCCGGAGAATAGGGCTACCGTGGCTAAGATCAGGGAGTCTTCTTGGTTTAGGAAAGGGCCAAATGCTAGACAGAAAAAGCTTGAAGTTGAAAACAAGGCCATAACAAATCCTGCTGACCAAAGCCATGAAAGTGATGGTGTAGTGGCTGAATCGAATCAAGAGCCGGTTGGTGCTGCTGCGAGTATAAACGCCTTTGATATCATATGTCTGTCCTCTGGCTTTAACCTTAGTGGATTCTTTGAAGACAGTTTTCAGAGAAGGGAAGCGAGGTTTACTTCCAGACAGCCGGCACAGGTCATCATATCAAGGCTGGAAGATATCGCGAAGCGGCTAAAGATGAAGATAAAGAAAAAGGCTGCTGGTTTGTTGAAATTAGAAGGACTCAAAGAAGGTAGGAAGGGGAATCTGTCACTGGATGCTGAGATCTTTGAGATCACTCCCTTTTTCCATTTGGTGGAGGTGAAAAAATCCAATGGAGACACAATGGAATATCAAGAAATTATGGATAAGGATATAAGGCCTGCCCTTAAGGACATCGTTTGGGTTTGGCAAGGTGAAAATCAACAGGAGCAATCCCAACAGTCGGCACAACAGATACCGGAAAACGACCAGCAGTAA 1368 0.4408 MDSTTNTLMQRYELGRLLGQGTFGKVYYARSSITNQSVAIKVIDKDKVIRTGQCERIKREVTIMRLVRHPYIIQLLEIMATKSKIYFVMEYAKGGELFDLVAKGKLKEDDAHKYFRQLVNAVDFCHSRGVYHRDIKPENLLLDENEDLKVSDFGLSALAESKRKDGLLHTTCGTPSYVAPEVIRRKGYDGTKADIWSCGVVLFVLLAGYLPFHDSNLIEMYRKISKGEFTCPSWFPNNVRRLLCKMLDPDPENRATVAKIRESSWFRKGPNARQKKLEVENKAITNPADQSHESDGVVAESNQEPVGAAASINAFDIICLSSGFNLSGFFEDSFQRREARFTSRQPAQVIISRLEDIAKRLKMKIKKKAAGLLKLEGLKEGRKGNLSLDAEIFEITPFFHLVEVKKSNGDTMEYQEIMDKDIRPALKDIVWVWQGENQQEQSQQSAQQIPENDQQ 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90781g00005 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Stsc90781g00005 455 ProSiteProfiles NAF domain profile. 307 331 IPR018451 GO:0007165
Stsc90781g00005 455 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90781g00005 455 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 427 - -
Stsc90781g00005 455 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Stsc90781g00005 455 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90781g00005 455 Pfam NAF domain 310 367 IPR004041 GO:0007165
Stsc90781g00005 455 Gene3D Kinase associated domain 1, KA1 313 432 - -
Stsc90781g00005 455 FunFam Non-specific serine/threonine protein kinase 5 305 - -
Stsc90781g00005 455 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Stsc90781g00005 455 FunFam Non-specific serine/threonine protein kinase 308 431 - -
Stsc90781g00005 455 SUPERFAMILY Protein kinase-like (PK-like) 8 294 IPR011009 -
Stsc90781g00005 455 CDD CIPK_C 313 427 - -
Stsc90781g00005 455 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90781g00005 455 Gene3D Transferase(Phosphotransferase) domain 1 3 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90781g00005 Stsc-Chr90781 43179 45613 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90781g00005 1 442 CBL-interacting serine-threonine protein kinases AT5G58380 65.510 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Stsc90781g00005 Pkinase 1.3e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90781g00005 - K07198 gmx:100779316 635.18