LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90780g00005	ATGAATAAAAAAGTCCCTAATACTAATCATCTATTCCCATTATTCTGGCTTGTTTGTATAACGATTTGGTTTAACGCAATTCACGGTTCATCACAACCAAACAAAGCAGACTCACTGATCTTGGGTTGCGGTTTAGAAGGCGGTGGAAAAGACACCGACGGAAGACAATGGGAACCGGACAACAAGTACGTATCAGGGGGCAAATCCGTAACTTCAAAAGCCACCTTCCAAGACCCTTCCCTTCTCTCCGTGGTTCCTTACATGACTGCAAGAATCTTCCCATCGGAAGCCGCCTACAAGTTCCCGGTTCAACCGGACAAGCGTTATTGGCTCAGGCTCCATTTCTACCCGGCTCTTTACTCCAATTTCGACCCATCCAATTCATATTTCTCATTAACCGCCAATGACGTCGTTCTCCTTACAAATTTCAGCGCATCAATCACATGTCAGGCTCTCTCTCAAGCCTACATTGACAGAGAATATTCCTTGGCGCCCCTAAATTCTAATTCCCTCACACTCACCTTTAAGCCATCTGAGCATCACAATGGCGCTTTCGCCTTCGTCAACGGCATTCAATTGGTCCAGATGCCGGACCTTTTTGACACAGCTACAATGGTAGGCTTTGCTGACCAATCAGTTGATTTAAAACCCTTGCATTCTCAGACTATGTTCAGATTAAACGTGGGCGGTCAATTCATCTCGCCGATGCAAGACTCCGGCCTAAGCCGGATGTGGTACGACGACACACCGTATCTGTACGGTGCGGCTACCGGTGTCACAACCCAAGCAGCCAAAGATGTCAAAATCAATTACCAAACCATGCCACAATACGTGGCTCCTCCTAGTGTATACTCTACGTCAAGATCCATGGGAGAGGATAAGGATGTAAACCTTCGCTACAATCTCACATGGGTTTTTAATGTCGATCCGAATTCCATGTATCTTGCTAGGTTGCATTTTTGTGACTATTACTATTCCCAAGTAAATGAACTCGTCTTCCAGATCTTTCTCAATAACCAAACGGCTACGGATGTTTTTGATGTTATTGCGGTGTCAGGTGGAAAAGGTGTTCCAATTTACAAAGACTATGTGGTGTATACACAAGGAAATGATGAAGGTGTTGGGAATACTCTTTGGCTTGCACTGCACCCTTCAGTGGATCAAAAACCGTCTTATTACGATGCTTTGCTTAACGGCGTTGAGATTTTCAAGCTCAACGATACAGATTTGTCCGGTCCTAATCCTCTACCTTCCGAATTGATGGAAGAGCACGAGGAAAAGGAACGGACCTTTGAAGAAGAGGAGGAAGGTGTCTCCACTGCCACAAAAAGGCACATTGTGATTGGTGGCGCTACGGTAGGCGGCGCTGGTTTAGTTGCTGCAATACTCATTGTTGCTCTTAAGAATAAAAAGAAGGCTCCGGCTTCGTACTCGAACACTACTTCGAGTTGGTTGCCGGTTTATGGGAACACGCACACCAATGGGACCAAAAAATCCATGTCAGGGAAGAGTAACAGTGGTGGTAGCAACCACTTGTCAGCAATGACTCAGGGACTTTGTCGGTACTTCTCATTACAAGAAATGAGGCACGCAACGAAGAATTTCGACGACTCGAATGTTATTGGTGTTGGAGGGTTTGGAAAAGTTTACAAGGGTGTGATCGACAATGGGTTTAAAGTAGCAATCAAGAGATCAAATCCGCAATCAGAACAAGGAGTGAATGAATTTCAAACAGAGATTGAGATGCTTTCCAAGTTAAGGCACAAGCATTTGGTTTCGCTGATCGGATTTTGTGAGGAAGGTGAGGAGATGTGCCTTGTTTATGACTACATGGCTCTTGGCACCTTAAGGGAACATTTATACAAAGGAAACAAGCCATTGGAAACTCTAACATGGAAGCAAAGATTGGAAATATGCATTGGAGCCGCAAGAGGGCTTCATTACCTTCACACCGGGGCCAAATACACAATCATCCATAGAGACGTGAAAACAACTAACATCCTACTGGATGAGAATTGGGTTGCAAAGGTTTCGGATTTTGGGTTGTCGAAAACCGGTCCAAACATGAACCAAGGCCATGTTACCACAGTGGTGAAGGGTAGTTTTGGATATTTGGATCCTGAATACTTCAGGAGGCAACAGTTAACTGAAAAATCTGACGTGTACTCATTTGGAGTAGTGTTGTTTGAGGTGTTGTGTGCTAGGCCTGCATTGAATCCTAACCTTCCAAAGGATCAAGTTAGCCTTTCGGATTGGGCTTTGCAGTGCAAGAGAAAAGGAACATTGGAGAACATCATTGATCCTTGTCTCAAAGGGAAGATCAACCCGGAGAGCCTGAACAAGTTCGCCGATGCCGCCGAGAAGTGTCTGTCCGATTGCGGACTCGATCGTCCCTCCATGAATGACTTGTTGTGGAACCTTGAATTTGCTCTCAACTTGCAAGAGAACCTTGCTGCTGCTGCTTCTTCATCACATGTTGATGATGAAACTCATCAGTTTGAAGAAGTGAACTTGAATAACGACAATAATGACATGGAGGCACAAACTTGA	2550	0.4486	MNKKVPNTNHLFPLFWLVCITIWFNAIHGSSQPNKADSLILGCGLEGGGKDTDGRQWEPDNKYVSGGKSVTSKATFQDPSLLSVVPYMTARIFPSEAAYKFPVQPDKRYWLRLHFYPALYSNFDPSNSYFSLTANDVVLLTNFSASITCQALSQAYIDREYSLAPLNSNSLTLTFKPSEHHNGAFAFVNGIQLVQMPDLFDTATMVGFADQSVDLKPLHSQTMFRLNVGGQFISPMQDSGLSRMWYDDTPYLYGAATGVTTQAAKDVKINYQTMPQYVAPPSVYSTSRSMGEDKDVNLRYNLTWVFNVDPNSMYLARLHFCDYYYSQVNELVFQIFLNNQTATDVFDVIAVSGGKGVPIYKDYVVYTQGNDEGVGNTLWLALHPSVDQKPSYYDALLNGVEIFKLNDTDLSGPNPLPSELMEEHEEKERTFEEEEEGVSTATKRHIVIGGATVGGAGLVAAILIVALKNKKKAPASYSNTTSSWLPVYGNTHTNGTKKSMSGKSNSGGSNHLSAMTQGLCRYFSLQEMRHATKNFDDSNVIGVGGFGKVYKGVIDNGFKVAIKRSNPQSEQGVNEFQTEIEMLSKLRHKHLVSLIGFCEEGEEMCLVYDYMALGTLREHLYKGNKPLETLTWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMNQGHVTTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPNLPKDQVSLSDWALQCKRKGTLENIIDPCLKGKINPESLNKFADAAEKCLSDCGLDRPSMNDLLWNLEFALNLQENLAAAASSSHVDDETHQFEEVNLNNDNNDMEAQT	849

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90780g00005	849	Pfam	Protein tyrosine and serine/threonine kinase	539	736	IPR001245	GO:0004672\|GO:0006468
	Stsc90780g00005	849	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	657	669	IPR008271	GO:0004672\|GO:0006468
	Stsc90780g00005	849	ProSitePatterns	Protein kinases ATP-binding region signature.	541	563	IPR017441	GO:0005524
	Stsc90780g00005	849	Gene3D	Phosphorylase Kinase; domain 1	495	610	-	-
	Stsc90780g00005	849	FunFam	receptor-like protein kinase FERONIA	497	610	-	-
	Stsc90780g00005	849	FunFam	FERONIA receptor-like kinase	218	406	-	-
	Stsc90780g00005	849	CDD	STKc_IRAK	541	808	-	-
	Stsc90780g00005	849	SMART	serkin_6	535	810	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc90780g00005	849	Gene3D	-	218	406	-	-
	Stsc90780g00005	849	Gene3D	-	42	197	-	-
	Stsc90780g00005	849	Pfam	Malectin-like domain	42	404	IPR024788	-
	Stsc90780g00005	849	PANTHER	OS07G0166700 PROTEIN	519	814	IPR045272	GO:0004714\|GO:0006468
	Stsc90780g00005	849	FunFam	FERONIA receptor-like kinase	38	197	-	-
	Stsc90780g00005	849	FunFam	Receptor-like protein kinase FERONIA	611	828	-	-
	Stsc90780g00005	849	SUPERFAMILY	Protein kinase-like (PK-like)	510	810	IPR011009	-
	Stsc90780g00005	849	Gene3D	Transferase(Phosphotransferase) domain 1	611	832	-	-
	Stsc90780g00005	849	MobiDBLite	consensus disorder prediction	824	849	-	-
	Stsc90780g00005	849	ProSiteProfiles	Protein kinase domain profile.	535	810	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90780g00005	Stsc-Chr90780	36116	38665	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90780g00005	37	816	Receptor kinase-like Gene Family	AT3G51550	54.296	0.0	802

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Stsc90780g00005		Malectin_like	4.3e-38	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90780g00005	-		-	gmx:100815737	1210.28