Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90780g00001 ATGTCCACCGCCGCAGCCCAAGCCAAGGCCAAGAAAACGGCTTCGTCCAAGAAGCCTCCTTCTCATCCTCCCTTCGCCGAGATGATAACGGATGCGATTTCGAGTTTGAAGGAGAGAACCGGTTCAAGCCAATACGCGATAACGAAGTTCCTCGAAGAGAAGCACAAGAATCTTCCAACTTCCTTCAGGAAGCTTCTTCTCCACAACCTCAAGAAGTCCGTCGCTGCAGGAAAGCTCGTGAAAGTGAAGAACTCTTTCAAGCTTGCGGCGAAAGCTCCTGCTTCCGCTCCCGCGAAGGCATCTTCCACCGCCGCAAAGCCTAAAACCGCCCCGGCTTCCAAGCCTGCTTCCAAACCTAAGGCCAAAGCAACTGCCGCTCCGAAGCAGAAAGCCACCGCCAAACCTAAAGCCAAGGCTGCTGAAAAGCCGAAGCCGAAGCCGAAGCCAAACGCAAAGGCTCCTGCGAAGAAGGTTGCTGCAAAGCCGGTGAAGAAGACGCCGGTTAAGAAGCCGAAAAGCGTGAAGTCTCCGGCGAAGAAAGCAGCGGCGAAGAAGATTAAGAAGTGA 567 0.5414 MSTAAAQAKAKKTASSKKPPSHPPFAEMITDAISSLKERTGSSQYAITKFLEEKHKNLPTSFRKLLLHNLKKSVAAGKLVKVKNSFKLAAKAPASAPAKASSTAAKPKTAPASKPASKPKAKATAAPKQKATAKPKAKAAEKPKPKPKPNAKAPAKKVAAKPVKKTPVKKPKSVKSPAKKAAAKKIKK 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90780g00001 188 MobiDBLite consensus disorder prediction 158 188 - -
Stsc90780g00001 188 MobiDBLite consensus disorder prediction 134 148 - -
Stsc90780g00001 188 CDD H15 19 88 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc90780g00001 188 Gene3D - 16 102 IPR036388 -
Stsc90780g00001 188 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 21 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc90780g00001 188 PANTHER HISTONE H1 5 172 - -
Stsc90780g00001 188 PRINTS Histone H5 signature 144 161 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc90780g00001 188 PRINTS Histone H5 signature 8 29 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc90780g00001 188 PRINTS Histone H5 signature 166 185 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc90780g00001 188 PRINTS Histone H5 signature 108 122 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc90780g00001 188 PRINTS Histone H5 signature 35 52 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Stsc90780g00001 188 SMART h15plus2 19 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc90780g00001 188 MobiDBLite consensus disorder prediction 89 188 - -
Stsc90780g00001 188 MobiDBLite consensus disorder prediction 1 25 - -
Stsc90780g00001 188 Pfam linker histone H1 and H5 family 22 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Stsc90780g00001 188 SUPERFAMILY "Winged helix" DNA-binding domain 18 100 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90780g00001 Stsc-Chr90780 3884 4952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90780g00001 14 96 Single Myb Histone (SMH) Gene Family AT1G49950 34.118 2.13e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90780g00001 K11275 - cpap:110811938 117.857