Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90779g00009 ATGGGCACTGAAAAGGTTGGAAGTTGTAGGAAATTTCTAGAGAGCTCAAAACCCTATTTTGCAATGATATCTTTACAATTTGGATATGCTGGAATGAATGTTATTACTAAGCTTTCTCTTAATCAAGGCATGAGTCACTATGTTCTTGTTGTTTATCGCCATGCCTTTGCAGCTGCTAGCATTGCTCCATTTGCCTTTATTTTTGAAAGGAAAGGTCAACCGAAGATAACATTCAAAGTTTTCATGCAGCTTTTCATTCTAGCTCTGCTTGGGCCAGTGATCGATCAAAATTTTTACTATGCTGGGTTGAAGCTTACATCTCCAACTTTTTCATGTGCAATGAGCAACATGCTTCCGGCCATGACTTTTGTTATGGCAGTTATATGCCGGATGGAAAAGATAGACATGAAGAAGGTGAGATGCCAAGCCAAAGTAGTGGGAACATTAGTGACAGTTGCTGGGGCCATGTTGATGACATTATACAAAGGTCCTATTATGGAATTGGTGTGGGCTAAACATCATACAGAAACTCATCACAACAACACCAATTCTTCTTCATCATCAACAATCAACAATGGATCCTCTGAAAGAGATTGGTTCTTAGGGTGCACTTTCCTCATCATTGCTACACTTGCCTGGGCTTCCCTCTTTGTTCTACAAGCGAAAGCTATAGAAACGTACAAGAATCATCAACTAAGCCTGACAACAATTATATGCTTCATAGGAACTCTTCAAGCTACTGCAGTTACTTTTGTTATGGAACACAATCCTTCTGTTTGGAGAATTGGTTGGGACATGAATCTTCTTGCTGCTGCCTATGCTGGGATTGTGACATCAAGTATATCATACTATGTACAAGGGTTGGTAATTAAGAAGAAGGGACCTGTCTTTGCAACTGCGTTTAGCCCTCTTATGATGATCATTGTTGCCATCATGGGCTCCTTCATCCTTGCTGAGCAGATTTATCTTGGAGGTGTGGTTGGATCCATCTTGATTGTCATAGGCTTGTACTCTGTTCTATGGGGAAAGCACAAAGAACAAATAGAGACCAAAATAATGGGACATCATGATGATAATGATATGCAACATTTGCCTGTTACTAAAGCTAATAATAATGGTGCTCAAAATTTTGGAAATGGAGACTCAAAAAATGATGCCACATTAGTAGATCATCATCATTGCACTCAAGAAAATTTTGGTCATCAAAAAGAAGAAGTCAACAACAAGAACAACAAGGAGAATCACTACTCTTCAGTTGTAATAGCCATGACTAACCAAGAGGCAAATTAA 1290 0.3907 MGTEKVGSCRKFLESSKPYFAMISLQFGYAGMNVITKLSLNQGMSHYVLVVYRHAFAAASIAPFAFIFERKGQPKITFKVFMQLFILALLGPVIDQNFYYAGLKLTSPTFSCAMSNMLPAMTFVMAVICRMEKIDMKKVRCQAKVVGTLVTVAGAMLMTLYKGPIMELVWAKHHTETHHNNTNSSSSSTINNGSSERDWFLGCTFLIIATLAWASLFVLQAKAIETYKNHQLSLTTIICFIGTLQATAVTFVMEHNPSVWRIGWDMNLLAAAYAGIVTSSISYYVQGLVIKKKGPVFATAFSPLMMIIVAIMGSFILAEQIYLGGVVGSILIVIGLYSVLWGKHKEQIETKIMGHHDDNDMQHLPVTKANNNGAQNFGNGDSKNDATLVDHHHCTQENFGHQKEEVNNKNNKENHYSSVVIAMTNQEAN 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90779g00009 429 SUPERFAMILY Multidrug resistance efflux transporter EmrE 261 345 - -
Stsc90779g00009 429 PANTHER WAT1-RELATED PROTEIN 17 355 IPR030184 GO:0016020|GO:0022857
Stsc90779g00009 429 Pfam EamA-like transporter family 201 340 IPR000620 GO:0016020
Stsc90779g00009 429 Pfam EamA-like transporter family 18 159 IPR000620 GO:0016020
Stsc90779g00009 429 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90779g00009 Stsc-Chr90779 74949 79300 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90779g00009 1 389 Nodulin-like Gene Family AT5G07050 68.367 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90779g00009 - - gmx:100804390 581.252