Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90778g00009 ATGGAGTGTAACAGGGATGAGGCCTTGAGGGCCAAGGAAGTTGCTGAAAGCAAAATGCAACGGGGTGACTTTCAAGGGGCGCTCAAGTTTGCACTGAAGGCAAAGAAAATGTATGCTGATGTTGAGAACATAACTCAGATCCTTACGGTTTGTGAGGTTCACAATGCAGCACAGAACAAATTCACTGGTGGAACTGACATGGACTGGTATGCTATTCTTCAGACAGCACAATTGGCTGATGAAGCAACTATAAAGAAGCAGTACCGGAAGCTTGCGTTATTGCTTCACCCTGATAAGAACAAATTTCCTGGTGCAGAAGCTGCTTTCAAGTTGATTGGGGAAGCCAACGGAGTGTTGGGTGACCAATCAAAACGTTCTGCGTATGATAGGAAATATAAGGTCCCCGTGAAACCTGCATTCACTGCAAGAAATGTTCAAAATGCAAATGCAACAAATTATCAGAACAATTATTTTCCAATGTCCACCTTTCGTTCCTTCCGTAATGGGCATCAGCACCCCGAACCACAGCTATGTTGGGCAATTTGCCCACATTGTAACATTAAGTGCCCATACTACAAAGAAGCCATTATGTGCACAACCCTAAGTTGTTACAAATGTTTGAAAACCTTTGATGCTTTGCTGGACCAGAATGTCTCACCTGGATATACAAGGACACCATTTACTAACCAGAATGAGGCTCAAAAGCATGCTGCCCCAAAACCAGCTTCAAAAAGTCATGGTGGAGGAAATGCAGAGAACTTTGTGCCTGTGTCTATGAGGAAGTGTGCTGCTGACGGAGTTCGTGTGCATTGTAAAGGTAGAAAGAGTAATGATGGTTCTGTGGCTAGAGGCCAATCAAAGGGCAATGTTTCTGCATCTAAAGGGGCCAAAGCAACTGAATCACAACACTCGGCAAATGTTGGAAGTAAGAGAGTGAGACAGTCAGTTCCAGATCCAAGAGAAAATTTCAACTATGGCAATGTCAAAGGCACCGTAGATGCCAATATTCAGGAGAATTGTGTTGATCCTTCTACACGTAATGCTAGGAGATCTTCTAGGCAAAGGCAGCATGTTTCATACGCTGAAAGTGATGACAATAGCGATGATGATGATGATTTGGAGAGCCCTTCCAAAAAACAAAAGCAAAATGAATCATTCGACACCGATGGATTTGTGAAGAAGGAAGAGCCTGCAGGTGGGGCAGCTGATCAGAAAGGAAAGGTGAGAAGTAAAGATTGCGATCCACCTGAAGAAGCATTTTCACATAATAAAAGCAAATTTGAGGACGACTGCTCAACATTTAATTCACATGCCCCCTCTGATGCAGAGCCCATTATTTGTCCTGATGCAGAATTCAATAATTTTGAGAAGCATAGGGCTAAGGATTGTTTTGCTGTTAATCAATTCTGGGCTCTTTATGATACTGCTGATGCTATGCCAAGATATTATGCTCTCATTAAGAAAGTGTTCTTCCCTTTCAAGCTTCTGATCACTTGGTTAGAGCCTGACCCAGATAATGAAGATGAGATTGATTGGCATGATGCAGAGTTGCCTGTTGCTTGTGGTAAATTCAGAGTTTCTAGATCTCAGAACATTAGAGATTGTACTATGTTTTCTCACCAAATAGGCTATTTGAAAGGCAGTCGCAGAGGTTCTTATCTGATATATCCCAAGAAGGGAGAAACTTGGGCAATTTTCAGGGATTGGGATATCAAATGGAGTTCAAATCCTAAAGAGCATTCAAAGTATAAATTCGACTTTGTGGAAATCCTGACAGATTTCAGTGAAAATGTTGGCATTGAAGTTGCTTTTCTCAGTAAAGTTGAAGGATTTATCAGCATCTTTCAGAGAAATGAGAAGAACGGAAAGAACACATTTTCTGTTCCACCTAATGAGCTTTATCAGTTCTCGCATCAAGTTCCTTCATGCAAGATGACTGGTACTGAAAGGGAAGGTGTTCCTATAGGATCTTTTGAACTTGATCCTGCTGCTGTGCCTCTTGATCTTCTTGGGAGGTCGTGTAAAGCGGAAGAATAG 2037 0.4202 MECNRDEALRAKEVAESKMQRGDFQGALKFALKAKKMYADVENITQILTVCEVHNAAQNKFTGGTDMDWYAILQTAQLADEATIKKQYRKLALLLHPDKNKFPGAEAAFKLIGEANGVLGDQSKRSAYDRKYKVPVKPAFTARNVQNANATNYQNNYFPMSTFRSFRNGHQHPEPQLCWAICPHCNIKCPYYKEAIMCTTLSCYKCLKTFDALLDQNVSPGYTRTPFTNQNEAQKHAAPKPASKSHGGGNAENFVPVSMRKCAADGVRVHCKGRKSNDGSVARGQSKGNVSASKGAKATESQHSANVGSKRVRQSVPDPRENFNYGNVKGTVDANIQENCVDPSTRNARRSSRQRQHVSYAESDDNSDDDDDLESPSKKQKQNESFDTDGFVKKEEPAGGAADQKGKVRSKDCDPPEEAFSHNKSKFEDDCSTFNSHAPSDAEPIICPDAEFNNFEKHRAKDCFAVNQFWALYDTADAMPRYYALIKKVFFPFKLLITWLEPDPDNEDEIDWHDAELPVACGKFRVSRSQNIRDCTMFSHQIGYLKGSRRGSYLIYPKKGETWAIFRDWDIKWSSNPKEHSKYKFDFVEILTDFSENVGIEVAFLSKVEGFISIFQRNEKNGKNTFSVPPNELYQFSHQVPSCKMTGTEREGVPIGSFELDPAAVPLDLLGRSCKAEE 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90778g00009 678 SUPERFAMILY Chaperone J-domain 65 133 IPR036869 -
Stsc90778g00009 678 SMART dnaj_3 67 124 IPR001623 -
Stsc90778g00009 678 MobiDBLite consensus disorder prediction 273 424 - -
Stsc90778g00009 678 Gene3D DnaJ domain 65 174 IPR036869 -
Stsc90778g00009 678 MobiDBLite consensus disorder prediction 279 311 - -
Stsc90778g00009 678 MobiDBLite consensus disorder prediction 328 347 - -
Stsc90778g00009 678 CDD DnaJ 68 121 IPR001623 -
Stsc90778g00009 678 PRINTS DnaJ domain signature 104 124 IPR001623 -
Stsc90778g00009 678 PRINTS DnaJ domain signature 124 143 IPR001623 -
Stsc90778g00009 678 PRINTS DnaJ domain signature 70 88 IPR001623 -
Stsc90778g00009 678 PRINTS DnaJ domain signature 88 103 IPR001623 -
Stsc90778g00009 678 ProSiteProfiles dnaJ domain profile. 68 132 IPR001623 -
Stsc90778g00009 678 Pfam DnaJ domain 68 129 IPR001623 -
Stsc90778g00009 678 Pfam Domain of unknown function (DUF3444) 445 649 IPR024593 -
Stsc90778g00009 678 MobiDBLite consensus disorder prediction 372 424 - -
Stsc90778g00009 678 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED 1 669 - -
Stsc90778g00009 678 MobiDBLite consensus disorder prediction 224 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90778g00009 Stsc-Chr90778 58887 61194 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90778g00009 4 212 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.558 3.67e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90778g00009 - - aprc:113861153 690.649