Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90777g00002 ATGGAGAGGCACAAATGCTGCAGGCTCTGCTCAAGAACCTTCCCTAATGGAAGAGCCTTAGGTGGTCACATGAAGGCTCACTTAGCCACTTTCCCTCTCCCTCCCAAACCCCCTCAACCACCACCACCATTATTACCTTCTTCCGAATCCTCCTCTTCCTTTTCCTCCTTCTCTGAATCAGAACCAGAAGATGATAAGGCTGGTTTGGTTTATGGTTTGAGGGAGAATCCCAAGAAGAGTTTCAGAGTCGCAGATCCCGAGTTCTCTTCCTTCCCTGCACCACCACCACCGCCACCACTTCCAGCAGCTGTTGCAGTTGTTCAAGACAGAGAGAGCGAGACCGAGTCATCAAAGAATCCAACTCGGCAACGATCCAAGCGGACTAGGAGAACGGGGTCCATTCTTCACAGCAAGAGCTCCAAAAAAGAGGACGATGATGGCGATAAACACGAAGAAAGGCTCAAGAAGAAGCAGCCCAAGCTTGGGTTTATGGAATCGCCACCACAATCAGAAGAACAACAAGAACCAGTGAGCTCCATCTCGGAGACTTCAGACGTGGAAGACGTCGCCATGTTCCTGGTCATGCTCTCAAGGGACACGTGGCACAACAAGAATAATGCAGTAGGAGTAATAAAACAAGATCATGAAGAACGAGAAGAGGAAATTGAAAGATCAAAAAATGAGAAAGAAATCAAGATGACGAAGAAGGTTCGAGTTCGAGGGAAGCATAATCATCGGTGCGAGAATTGCAGTAAAACTTTTAGATCTTCGAGAGCGTTGGGAAGCCACAGGAGCATATGCTGTGAGGGAGGAAGATCAGGAGGGAGTGATAGAATCTTTGAATGCCCGTTTTGTTTCAAAATCTTTGGGTCTGGGCAAGCTCTTGGAGGTCACAAGAGATCTCATCTTATCACCATGGCTGCACCTTCCTCTTCTTCTACTGCCAACCATTCATTTGTTTTCAAGAATTCTGGAGCCAAGACTTTCATAGATCTTAACTTGCCTGCTCCATTAGAAGAAGAACAAGATGAATATGACTTTGGAGTTGTTTCCGATGTTTCCGATGCTTAA 1071 0.4659 MERHKCCRLCSRTFPNGRALGGHMKAHLATFPLPPKPPQPPPPLLPSSESSSSFSSFSESEPEDDKAGLVYGLRENPKKSFRVADPEFSSFPAPPPPPPLPAAVAVVQDRESETESSKNPTRQRSKRTRRTGSILHSKSSKKEDDDGDKHEERLKKKQPKLGFMESPPQSEEQQEPVSSISETSDVEDVAMFLVMLSRDTWHNKNNAVGVIKQDHEEREEEIERSKNEKEIKMTKKVRVRGKHNHRCENCSKTFRSSRALGSHRSICCEGGRSGGSDRIFECPFCFKIFGSGQALGGHKRSHLITMAAPSSSSTANHSFVFKNSGAKTFIDLNLPAPLEEEQDEYDFGVVSDVSDA 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90777g00002 356 Gene3D Classic Zinc Finger 210 308 - -
Stsc90777g00002 356 ProSiteProfiles Zinc finger C2H2 type domain profile. 280 302 IPR013087 -
Stsc90777g00002 356 MobiDBLite consensus disorder prediction 89 103 - -
Stsc90777g00002 356 SUPERFAMILY beta-beta-alpha zinc fingers 6 264 IPR036236 -
Stsc90777g00002 356 Coils Coil 212 235 - -
Stsc90777g00002 356 ProSitePatterns Zinc finger C2H2 type domain signature. 282 302 IPR013087 -
Stsc90777g00002 356 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 347 IPR044303 GO:0006355
Stsc90777g00002 356 MobiDBLite consensus disorder prediction 31 47 - -
Stsc90777g00002 356 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 32 IPR013087 -
Stsc90777g00002 356 Pfam C2H2-type zinc finger 245 264 - -
Stsc90777g00002 356 Pfam C2H2-type zinc finger 280 303 - -
Stsc90777g00002 356 Pfam C2H2-type zinc finger 6 29 - -
Stsc90777g00002 356 ProSitePatterns Zinc finger C2H2 type domain signature. 6 27 IPR013087 -
Stsc90777g00002 356 MobiDBLite consensus disorder prediction 59 82 - -
Stsc90777g00002 356 SMART c2h2final6 280 302 IPR013087 -
Stsc90777g00002 356 SMART c2h2final6 245 265 IPR013087 -
Stsc90777g00002 356 SMART c2h2final6 5 27 IPR013087 -
Stsc90777g00002 356 MobiDBLite consensus disorder prediction 167 183 - -
Stsc90777g00002 356 MobiDBLite consensus disorder prediction 136 160 - -
Stsc90777g00002 356 MobiDBLite consensus disorder prediction 30 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90777g00002 Stsc-Chr90777 17814 18884 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90777g00002 2 342 C2H2 Transcription Factor Family AT1G02030 34.454 2.63e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc90777g00002 zf-C2H2_6 8e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90777g00002 - - aip:107629628 392.504