Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90775g00009 ATGAAGATCCAGTGCGACGTGTGTAGCAAGGAAGAGGCATCGGTGTTCTGCACCGCCGATGAAGCCGCCCTATGCGGCGGTTGCGACCACCGTGTCCACCATGCCAACAAGCTTGCATCCAAACACCAACGCTTCTCTCTTCACCGTCTTTCATCAAAACAACAATTCCCTCTCTGTGATGTTTGCAAGGAGAGAAGGGCCTATGTGTTCTGCCAGCAAGACAGAGCAATTCTATGCAAAGATTGTGATGTTCCAATTCATTCTGCCAATGAACACACAAAGAAGCATACTAGATTCCTTGTCACCGGTGTTAAGCTCTCAGATTCTGCTAAACTCTATTCAGAAGCCTCTACTACCATTCCTCCTCTAACGGGAAGGAATAGTAGTAGTGACTCTAATTCTAAAGCTTCTCAGGTACCAAAGATTCTGGTACCTGACATAGCTTCTTCGGCCGCATCAACCGAACTTTCTCCCGTCAATGGAGAAAGTCTGGTTGGTGTTGCCAAAGAAGGCGCGTCGACAACTACTACTACTAGTAGCATATCTGAGTACTTGATAGAGACTATACCTGGCTGGCAAGTTGAAGACTTTCTTGATTCATCTAATGCTCCCTTTGGTTTCTCCAAGGGTGGTGACGAGATTTTTTCAGTGTTTGATGGTGGTATTGATGGAAATATGTATTCATTCTCAACAATGGAGAAGATTGGGATGTGGGTTCCTCAAGCACCACCACCACAACCACCTCTTCTATATCCTTCACAATTAGGACAATTTTGTGAGATCACAAAGGATGTCACCAACAACAACATCAAAGGTAGTAGCAGATCAAGGTTGGGGGATGATAATAATTTCATTGTTCCTCAAATTAGTCCTCAAGCCAAGAACACCAAGAGACCAAGATATCTATGGTAG 912 0.4463 MKIQCDVCSKEEASVFCTADEAALCGGCDHRVHHANKLASKHQRFSLHRLSSKQQFPLCDVCKERRAYVFCQQDRAILCKDCDVPIHSANEHTKKHTRFLVTGVKLSDSAKLYSEASTTIPPLTGRNSSSDSNSKASQVPKILVPDIASSAASTELSPVNGESLVGVAKEGASTTTTTSSISEYLIETIPGWQVEDFLDSSNAPFGFSKGGDEIFSVFDGGIDGNMYSFSTMEKIGMWVPQAPPPQPPLLYPSQLGQFCEITKDVTNNNIKGSSRSRLGDDNNFIVPQISPQAKNTKRPRYLW 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90775g00009 303 SMART bboxneu5 4 47 IPR000315 GO:0008270
Stsc90775g00009 303 SMART bboxneu5 54 101 IPR000315 GO:0008270
Stsc90775g00009 303 Pfam B-box zinc finger 57 94 IPR000315 GO:0008270
Stsc90775g00009 303 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Stsc90775g00009 303 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Stsc90775g00009 303 CDD Bbox1_BBX-like 5 47 - -
Stsc90775g00009 303 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 294 - -
Stsc90775g00009 303 ProSiteProfiles Zinc finger B-box type profile. 54 101 IPR000315 GO:0008270
Stsc90775g00009 303 Gene3D Classic Zinc Finger 1 100 - -
Stsc90775g00009 303 FunFam B-box zinc finger protein 21 1 99 - -
Stsc90775g00009 303 CDD Bbox1_BBX-like 58 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90775g00009 Stsc-Chr90775 83012 84904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90775g00009 1 303 C2C2-CO-like Transcription Factor Family AT1G75540 44.179 1.47e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Stsc90775g00009 zf-B_box 8.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90775g00009 - - lja:Lj5g3v0165540.1 320.472