Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90775g00008 ATGGCAGGTTTATTCTCTCTAGGTCCACAACACCATAGCAAACAAGAACAACAAGATCAAGAAGAACACAATCACAATCACAACAACAACAACATCCAATTACTCTTCAGAAACGAAGAGATCTACACCACCAACACCAACACCGCCAACAGAGGCTTCGAGATATGGCCTCATCAACCAAGCTACTACTCCTTCGGTTTGGGTCCAGCTAATAACAGAAACAGCAACACAAACCTAAACGACGACGTTTCTGTTTCTTTCTCTGATGATTCCGCTAACCGCTTCGGCTTCACTGTGATGAGATCTTCTTCTTCTGGATCCGCTTTGGGAACCGGCACCAATTGCCAAGACTGCGGTAACCAAGCCAAGAAAGATTGCCCTCACCTTCGCTGCAGAACCTGCTGCCGAAGCCGAGGGTTTCAGTGCTCCACTCACGTGAAGAGCACTTGGGTTCCTGCTGCCAAACGACGCGAGCGCCAGCAGACCCTCGCGTCGCTGCAGCAGCAGGGACACCACCACCGCCAAGATCACGAAGAACTCGGAGGAGGAGATGGTCTTTCTAGAAGAACTAGAGACGCCGCCGTGGGCGCCACTAGCTCCGCTTGCGTTCCCGTACCGATTACCACTACAGGGTTGGAACTGGGGCAATTCCCACCGGAGTTGAACTCTCCGGCGGTGTTCCGGTGTGTCAAAGTCAGCCCAATGGACGCACCGGATGACAGGTATGCCTATCAAACGGCTGTGAATATAGGAGGGCATGTTTTCAAAGGGATTCTCTATGATCAAGGTCCAGACAGTCCTTTCGCCACCAATGCCGCGGCCGGCGAGGGTTCCTCCCATGGAGGAGGTGAGGCTCATCATCAACAACTCAGTCTCATAACAACAACCGCCACAACCACCACCGGTGGCGGCATCACATTTGACCCTTCTCAGCTTTATCCGGCGCCGATGAACGCTTTCATGGCCGGTACGCAATTCTTTCCGCCTCCAAGAACCTAA 999 0.5265 MAGLFSLGPQHHSKQEQQDQEEHNHNHNNNNIQLLFRNEEIYTTNTNTANRGFEIWPHQPSYYSFGLGPANNRNSNTNLNDDVSVSFSDDSANRFGFTVMRSSSSGSALGTGTNCQDCGNQAKKDCPHLRCRTCCRSRGFQCSTHVKSTWVPAAKRRERQQTLASLQQQGHHHRQDHEELGGGDGLSRRTRDAAVGATSSACVPVPITTTGLELGQFPPELNSPAVFRCVKVSPMDAPDDRYAYQTAVNIGGHVFKGILYDQGPDSPFATNAAAGEGSSHGGGEAHHQQLSLITTTATTTTGGGITFDPSQLYPAPMNAFMAGTQFFPPPRT 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90775g00008 332 MobiDBLite consensus disorder prediction 158 189 - -
Stsc90775g00008 332 MobiDBLite consensus disorder prediction 170 186 - -
Stsc90775g00008 332 MobiDBLite consensus disorder prediction 1 27 - -
Stsc90775g00008 332 MobiDBLite consensus disorder prediction 269 290 - -
Stsc90775g00008 332 NCBIfam putative zinc finger domain, LRP1 type 114 156 IPR006510 -
Stsc90775g00008 332 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 318 IPR007818 GO:0003700|GO:0006355
Stsc90775g00008 332 NCBIfam LRP1 C-terminal domain 216 264 IPR006511 -
Stsc90775g00008 332 Pfam Domain of unknown function (DUF702) 112 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90775g00008 Stsc-Chr90775 67130 69233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90775g00008 1 331 C2H2 Transcription Factor Family AT1G19790 43.132 1.73e-82 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Stsc90775g00008 DUF702 1.4e-64 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90775g00008 - - gmx:100807290 359.377