Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90771g00015 ATGGCACCGGAGGGAGAGGAAGACGAAGGGGAGGGACAAAAGTTGGTGGAAGAAATCCAACGAGTGATTGAATCGGTTGCGCAATTCGGAGAATATAGAAAGACACAGAGAAAAGAATGCCACAATTTGGTGCGTCGGTTCAAGCTCATGTTGCCTCTCGTGGAAGAGCTCCGCGATCTGACGGAGCCATTCCACGAAAACGGCATCGTTTGGTTGAGGAACCTTTGGGATGCACTCTTGTTTGCCAAGCAACTCTTGAGATTATGTAGCGAAGGAAGCAAAATTCTCCTTGCAATGGAGACGGAGGCATATATGATAAAATTTCAGAGTGTTTATGAGAAATTGAGCCTAGCATTTGAAGATGTGCCTTGTGAAGAATTGGGAATCTCAGATGAAGTCCAAGAACAGCTTGAACTAATGCACACGCAGCTCAAGCGCGCTAGGAGGAGGACAGATACGCAGGACATGGAGCTTGCAATGGATATGATGGCGGTGTTATCCGGCGACGAACAGCGAAGTTCCGACAGTGCCATCATTGAGAGGCTAGCAAAGGTATTAGAGCTTCAAAGAGTTGAGGATCTCAAGATAGAAACCTTGGCGATCAAGCAACTCGCGGAGGAAAGGAAAGGGCAACAAGCTGATAGCACCAAGAGAATAATTGGCCTCCTTAACAAGTTCAAGAAAATTGCTGGCATGGAAGAAACAAGTGTTCTTGATGATCCTGTTGTGCCTAGGATGCTTGTCAAGAGCATATCTTTGGTTATCCCTCATGAGTTTCTTTGTCCTATAACACTTGAGATCATGACAGATCCTGTTATTATTGCAAGTGGACAGACATATGAAAGGGAAAGCATAGTGAAATGGTTTGATTCCAAGCACAATACATGTCCAAAGACAAGGCAAACACTTGATCACTTGCAACTAGCACCAAATTGTGCCTTAAAGAACTTAATTGAAGAATGGTGTGAAAAGAACCACTTCAAACTACCAAAGAAGTTCCAATCTTCAAGCCAAAAAAACGGTCCAATTATCAGCACAGAACAAATCCCATCTTTGGTTGAAAGCCTATCATCAATCCATTTAGAAGAACAGAGAAGAGCGGTTGAGAAGATTCGAATGGTGTCGAAAGAAAGCCCCGAGAATCGGATCTTGGTTGCTGAGAATGGAGGAATACCACCATTGATACAAATCTTATCTTATCCGGATTCAAAGATTCAAGAACATGCTGTGACAGCACTGTTGAATCTCTCAATTGATGAGAAGAACAAGAGGCTAATAGCAAAAGAAGGTGCTATTCCAGCAATCATAGAAGTTTTGGAGAATGGTAGCATTGTTGCTAAGGAAAATTCAGCAGCATGTTTGTTTAGTCTTGCAATGCTTGATGAGAACAAAGAAACTGTGGGATTGTCAAATGGGATTCCACCATTGGTGCAACTTCTGAAGAGTGGAACAGTCAGAGGGAAAAAAGATGCTATTACAGCACTCTTTAATTTGTCCCTTAACCATGCAAATAAAAGCCGGGCGATTAGTGCTGGTATTGTCGCACCTTTGCTTCGGTTACTTAAGGACACAAAGACAAACATGATTGATGAGGCACTGTCCATGCTGTTACTCCTCTCCTCGATTCACGACGGGAGGCAGGAGATTGGACAGCTGTCGCTCATCGAGACGCTTGTCGGGTTCATTAAGGATGGGACACCCAAGAACAAGGAGTGTGCTGCATCTGTGCTCCTAGAGTTGTGTACAAATAACTACTCCTTGTTACTTGCTGCACTTCAGTATGGAGTTTATGAGCATTTGATTCAGATCAAAGAGAGTGGAACAAATAGAGCACAGAGGAAAGCAAGTGCTCTCTTAGATCTTATAAGTAGGAGTGAGCAAATCTAA 1887 0.4335 MAPEGEEDEGEGQKLVEEIQRVIESVAQFGEYRKTQRKECHNLVRRFKLMLPLVEELRDLTEPFHENGIVWLRNLWDALLFAKQLLRLCSEGSKILLAMETEAYMIKFQSVYEKLSLAFEDVPCEELGISDEVQEQLELMHTQLKRARRRTDTQDMELAMDMMAVLSGDEQRSSDSAIIERLAKVLELQRVEDLKIETLAIKQLAEERKGQQADSTKRIIGLLNKFKKIAGMEETSVLDDPVVPRMLVKSISLVIPHEFLCPITLEIMTDPVIIASGQTYERESIVKWFDSKHNTCPKTRQTLDHLQLAPNCALKNLIEEWCEKNHFKLPKKFQSSSQKNGPIISTEQIPSLVESLSSIHLEEQRRAVEKIRMVSKESPENRILVAENGGIPPLIQILSYPDSKIQEHAVTALLNLSIDEKNKRLIAKEGAIPAIIEVLENGSIVAKENSAACLFSLAMLDENKETVGLSNGIPPLVQLLKSGTVRGKKDAITALFNLSLNHANKSRAISAGIVAPLLRLLKDTKTNMIDEALSMLLLLSSIHDGRQEIGQLSLIETLVGFIKDGTPKNKECAASVLLELCTNNYSLLLAALQYGVYEHLIQIKESGTNRAQRKASALLDLISRSEQI 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90771g00015 628 FunFam RING-type E3 ubiquitin transferase 12 125 - -
Stsc90771g00015 628 Pfam Armadillo/beta-catenin-like repeat 378 417 IPR000225 GO:0005515
Stsc90771g00015 628 Pfam Armadillo/beta-catenin-like repeat 461 499 IPR000225 GO:0005515
Stsc90771g00015 628 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 389 431 IPR000225 GO:0005515
Stsc90771g00015 628 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Stsc90771g00015 628 CDD RING-Ubox_PUB 256 308 IPR045210 -
Stsc90771g00015 628 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Stsc90771g00015 628 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 471 513 IPR000225 GO:0005515
Stsc90771g00015 628 FunFam RING-type E3 ubiquitin transferase 333 628 - -
Stsc90771g00015 628 Gene3D - 450 627 IPR011989 -
Stsc90771g00015 628 Gene3D - 13 125 IPR036537 GO:0007166
Stsc90771g00015 628 FunFam RING-type E3 ubiquitin transferase 250 328 - -
Stsc90771g00015 628 PANTHER U BOX DOMAIN-CONTAINING 37 622 - -
Stsc90771g00015 628 SUPERFAMILY RING/U-box 254 329 - -
Stsc90771g00015 628 SMART arm_5 419 459 IPR000225 GO:0005515
Stsc90771g00015 628 SMART arm_5 378 418 IPR000225 GO:0005515
Stsc90771g00015 628 SMART arm_5 542 582 IPR000225 GO:0005515
Stsc90771g00015 628 SMART arm_5 501 541 IPR000225 GO:0005515
Stsc90771g00015 628 SMART arm_5 460 500 IPR000225 GO:0005515
Stsc90771g00015 628 Gene3D - 331 449 IPR011989 -
Stsc90771g00015 628 Coils Coil 130 150 - -
Stsc90771g00015 628 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Stsc90771g00015 628 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 329 IPR013083 -
Stsc90771g00015 628 SUPERFAMILY ARM repeat 343 624 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90771g00015 Stsc-Chr90771 74458 77019 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90771g00015 15 628 U-box Gene Family AT5G42340 61.075 0.0 724
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90771g00015 - - gmx:100777362 926.391