Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90771g00010 ATGGCATCCGCCTCTTGTTCCACTTCAATTCCACCACAACAACCAAGATCATCATACACATATCACGTGTTCTTGAGTTTCAGAGGAGAAGACACTCGCAATGGATTCACTAGCCATCTCTATGCCGCCCTCAACAGAAAGGGAATCACTACCTACAAAGATGACAGAAACCTTCGCAAAGGCGATGTTATTTCTGATGTACTTGTGAAAGCAATTGAAGAGTCTATGTTTGCGGTCATTGTTTTCTCACCAGACTACGCTTCTTCCAGTTGGTGCTTGGATGAGCTATGCAAGATCATTGAGTGCAACAACAAGCTGGGGCTACAGATGGTGGTAGTGTTCTACGGTGTGGAGCCATGTGACGTGAGGCACCAAATTGGAACCTTCAGAGAAGCTTTTCAGAAACATGAACGGAGACATGAGAGTGAAAAGGTTAAAAGATGGAGAGATGCGTTAAAACAAGTTGCTGAGTATTCTGGCTGGAGCTCCAAAAATCACCCAGTGGAACAAGTGATTATTAAAATAGGCCTTGGATTCAATGATGTTCGCTATATAGCCATATGGGGATTGGGTGGCATAGGTAAGACTACTATTGCTAGAGCAGTCTTTGAAACCATTCGAAGTAGATTTGAAGTTTTTTGCTTTGTTGCTGATGTAAGGGAGCATTTTGAGAAACAAGGTATTTCTGGCGTGCAAAAGCAACTTCTCAAACAAATGAAGATAATAAGCTCAGATGCTGATTATATTGACAAGTATGATGGGAGCAAAAAAATTCAAACCTCTTTCCATGGCAAAAAGGTACTTATTGTTCTTGATGATGTAAGTCATGAAGATCAACTAGAGAATTTGGCCGAGAAAGATTGGTTTGGTCCTGGAAGCAGAATAATAATTACAACTAGGAACAAAGAGGTGCTAAAGCAACAAGGGAGGCATGAAACTTATAATGTTACAGGGTTAGTGGAAAGTGAAGCCTTTAACCTGTTTTGTTCGAAAGCTTTTAAACAGCCAGAACCTTTAGAAGGGTTTTGGGGTTTGTCTAAAGAAGTGGTGGATTATTGCTCTGGTCTTCCATTGGCACTTAAAGTATTAGGTTCCTATCTTAAAGGTAGACCTATTGCAGTTTGGCATAGTGCTGTTGAGAAAATAAAGAAGTCTTCACATTCTGAAATTATTGAAGTATTGAAAATAAGCTATTATGGGTTAGATTCTATGGAAAAGAATATCTTTTTAGATATTGCTTGTTTCTTTAAAGGATGGGAGAAAGATGAAGTAACAAAGATATTAAAAGAATGTGGTCATGAGGCTGAAATCTGTATTGATATTTTGATTAATAGATCATTACTGGTCACATTAGAGAATTGGGGTGGGAGAGATATTTTGGGGATGCATGATCTACTTGAAGATATGGGCAAACAAATTGTAATTTAA 1428 0.3873 MASASCSTSIPPQQPRSSYTYHVFLSFRGEDTRNGFTSHLYAALNRKGITTYKDDRNLRKGDVISDVLVKAIEESMFAVIVFSPDYASSSWCLDELCKIIECNNKLGLQMVVVFYGVEPCDVRHQIGTFREAFQKHERRHESEKVKRWRDALKQVAEYSGWSSKNHPVEQVIIKIGLGFNDVRYIAIWGLGGIGKTTIARAVFETIRSRFEVFCFVADVREHFEKQGISGVQKQLLKQMKIISSDADYIDKYDGSKKIQTSFHGKKVLIVLDDVSHEDQLENLAEKDWFGPGSRIIITTRNKEVLKQQGRHETYNVTGLVESEAFNLFCSKAFKQPEPLEGFWGLSKEVVDYCSGLPLALKVLGSYLKGRPIAVWHSAVEKIKKSSHSEIIEVLKISYYGLDSMEKNIFLDIACFFKGWEKDEVTKILKECGHEAEICIDILINRSLLVTLENWGGRDILGMHDLLEDMGKQIVI 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90771g00010 475 Pfam NB-ARC domain 180 397 IPR002182 GO:0043531
Stsc90771g00010 475 ProSiteProfiles TIR domain profile. 19 179 IPR000157 GO:0007165
Stsc90771g00010 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 412 IPR027417 -
Stsc90771g00010 475 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 474 IPR044974 GO:0006952
Stsc90771g00010 475 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 177 - -
Stsc90771g00010 475 Pfam TIR domain 21 164 IPR000157 GO:0007165
Stsc90771g00010 475 PRINTS Disease resistance protein signature 184 199 - -
Stsc90771g00010 475 PRINTS Disease resistance protein signature 261 275 - -
Stsc90771g00010 475 PRINTS Disease resistance protein signature 353 367 - -
Stsc90771g00010 475 SMART till_3 20 158 IPR000157 GO:0007165
Stsc90771g00010 475 SUPERFAMILY "Winged helix" DNA-binding domain 388 474 IPR036390 -
Stsc90771g00010 475 Gene3D - 174 313 IPR027417 -
Stsc90771g00010 475 Gene3D - 17 173 IPR035897 -
Stsc90771g00010 475 Gene3D - 319 402 IPR042197 -
Stsc90771g00010 475 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 161 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90771g00010 Stsc-Chr90771 51197 54916 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90771g00010 157 474 WRKY Transcription Factor Family AT5G45050 36.025 4.69e-49 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90771g00010 - - adu:107485814 665.611