Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90771g00008 ATGGCCTCCGCCTCTTCTTCCACTTCAGTCCCTCCACGACCACAACCACCAAGATCATCATACACCTATCACGTGTTCTTGAGTTTCAGAGGAGAAGACACTCGCACTGGATTCACTAGCCATCTCCATGCCGCCCTCAACAGAAAGGGAATCACTTCCTACAGAGATGACAAAAACCTTCGCAAAGGCGATGTTATTTCTGATGAACTTGTGAAAGCAATTGAAGAGTCTATGTTTGCAGTCATTGTTTTCTCACCAGACTACGCTTCCTCCAGTTGGTGCTTGGATGAGCTCTGCAAGATCCTTGACTGCAAGAACAAGCTAGGGCTACAGATGGTGGAAGTGTTCTACGGTGTGGAGCCATCTGATGTGAGGCACCATTTCAGGAAGCTTTCAAGAAGCACGAACAGAGACATGAGAGTGAAAAGACTTGCAAAGAAATTCTCTTTCTGTGAGGCAGTACTTGTGGAAAACATTGCTCAACATATATTTGAAACATTGATTCCAAAGTTGCCATCTTCAATGAAGAATCTTGTGGGGATTCAATCAAGAGTGGAACAAGTGATTAGTCAGATAGGCCTTGGATTGAATGATGTTCGCTACATCGGCATGTGGGGAATGGGCGGCATAGGCAAGACAACTATTGCTAGAGAAGTGTATGAAACCATTCGAAGTAGATTTGAAGTTACTTGCTTTCTTGTTGATGTAAGGGATCAATGTGAGAAAAAAGATATTGTCCACGTGCAAAAACAACTTCTTGATCAAATGCATATAGGTTCAACTACTGTTTTCAGCGAGTATGATGGGAGAACAATAATTCAAAACTCTTTACGTCTCAAAAAGGTACTTCTTGTTCTTGATGATGTAAATGATGAAAACCAATTAGAGAATTTGGCTGGGGAGCAAGATTGGTTTGGTCCTGGAAGCAGAATAATAGTCACAACTAGAGACATACACCTGCTAAAGGAACAAGAAGTGTGTGAAATTTATGAGGTTGAAGGGTTAGTAAAAGCTGAAGCCTTTAACTTCTTTTGTCTGAAAGCTTTTAAACACCCGGAACCTATGGAAGGGTTTTCAGATTTGTCCGAAGAAGTGCTCAAGTACAATGGTGGTCTTCCATTGGCACTTAAAGTATTGGGTTCCCATCTTTTTGGTAGATCCATTGAGATGAAAACGGTTGGTTGGGGATGCATGATCTGCTTGAAGAAATGGGCAAACTTATTGTCATTGAAGAATCTTCAAATGATGTTAGTAAGTGTAGCAGATTGTGGAGTTAACAAGGATTTTGATTCTGTAGTTACTCAAAAGAAGGAATTTGAAGCAACTTATGGCATCGTTTTGCATAGTGAGGACTTGGAGATTGAAGAGAATTGGAGTGATTATTTGGATAGAAGAGCTTTCTCTTTCTCAAATATATGCCCGCTAAAGCTTCTCATTTTCGACGATGTGCGAGTTCCATTCTGTGTGATATTCCTCTTTCTAAACAAGTTAGAGCACTTGGATTTGTCCTACTGCCACTATCTGAAGCAAACGCCAGATCTTTCTGGGGCACCAAATCTTAAAACACTTTATCTTAGGAGATGTAGGAAGCTGGATTATATTCACCCGTCTCTGGCACACCACAAGAGCCTTGTTGAATTGAATTTATGTCGATGTAGTAGTCTTGAAACACTTGGAGATAAATTGGAGATGAGTTCACTCGAGAAACTAAATCTAAAGTACTGCAAGAGTTTGAGAAGACTGCCAGAATTTGGGGAATGCATGAAACAATTATAG 1776 0.4071 MASASSSTSVPPRPQPPRSSYTYHVFLSFRGEDTRTGFTSHLHAALNRKGITSYRDDKNLRKGDVISDELVKAIEESMFAVIVFSPDYASSSWCLDELCKILDCKNKLGLQMVEVFYGVEPSDVRHHFRKLSRSTNRDMRVKRLAKKFSFCEAVLVENIAQHIFETLIPKLPSSMKNLVGIQSRVEQVISQIGLGLNDVRYIGMWGMGGIGKTTIAREVYETIRSRFEVTCFLVDVRDQCEKKDIVHVQKQLLDQMHIGSTTVFSEYDGRTIIQNSLRLKKVLLVLDDVNDENQLENLAGEQDWFGPGSRIIVTTRDIHLLKEQEVCEIYEVEGLVKAEAFNFFCLKAFKHPEPMEGFSDLSEEVLKYNGGLPLALKVLGSHLFGRSIEMKTVGWGCMICLKKWANLLSLKNLQMMLVSVADCGVNKDFDSVVTQKKEFEATYGIVLHSEDLEIEENWSDYLDRRAFSFSNICPLKLLIFDDVRVPFCVIFLFLNKLEHLDLSYCHYLKQTPDLSGAPNLKTLYLRRCRKLDYIHPSLAHHKSLVELNLCRCSSLETLGDKLEMSSLEKLNLKYCKSLRRLPEFGECMKQL 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90771g00008 591 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 389 IPR027417 -
Stsc90771g00008 591 Gene3D Ribonuclease Inhibitor 483 591 IPR032675 -
Stsc90771g00008 591 Pfam TIR domain 23 180 IPR000157 GO:0007165
Stsc90771g00008 591 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 132 IPR035897 -
Stsc90771g00008 591 Gene3D - 168 329 IPR027417 -
Stsc90771g00008 591 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 468 583 IPR044974 GO:0006952
Stsc90771g00008 591 Gene3D - 17 167 IPR035897 -
Stsc90771g00008 591 SMART till_3 22 159 IPR000157 GO:0007165
Stsc90771g00008 591 PRINTS Disease resistance protein signature 369 383 - -
Stsc90771g00008 591 PRINTS Disease resistance protein signature 276 290 - -
Stsc90771g00008 591 PRINTS Disease resistance protein signature 201 216 - -
Stsc90771g00008 591 PRINTS Disease resistance protein signature 492 508 - -
Stsc90771g00008 591 ProSiteProfiles TIR domain profile. 21 167 IPR000157 GO:0007165
Stsc90771g00008 591 Pfam NB-ARC domain 185 385 IPR002182 GO:0043531
Stsc90771g00008 591 Gene3D - 335 417 IPR042197 -
Stsc90771g00008 591 SUPERFAMILY RNI-like 462 582 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90771g00008 Stsc-Chr90771 44260 47130 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90771g00008 179 386 WRKY Transcription Factor Family AT5G45050 34.928 5.53e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90771g00008 - - adu:107485814 540.036