LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90771g00001	ATGCCATCGGAGGTAGGTGAATCCTCTCATTCCTCTACCCCTGCTTCACAAAGATCATGCACCCATCAAGTGTTCTTAAGTTTCAGAGGAAAAGACACTCGCAAAGGATTCACTAGCCATCTCTATGCCGCACTCGTCAATAGGGGAATCACAACCTATATCGATGACCAACTTCGCAAAGGCAAAGTTATGTCACAAGAACTCGTTAAAGCAATTGAAGAGTCTATGTTTGCAGTCATCGTTTTCTCTCCAAATTTCGCTTCCTCCTCTTGGTGCTTGGATGAGGTCGTCAAGATTGTTGAGTGCAAGGAGAAGCTGGGGCTAGGGATAGTGGCAGTCTTCTACCGTGTGGACCCTTGTGTAGTGAGGCACCAAAAGAAAACCTTTAGGAAAAATTTCAAGATACATGAAATAAGATACAAGGTGCCTAAAGAGAAACTTGAAACCTGGAAAGCTGCGTTAAGAAAAGTTGCCGGTCGTTCTGGCTGGGTCACTAAAGAATACCGGAATGACCACGAACTCGTGCAAAGTATTGCTCAACATGTACATGAAGAATTGATCAGAAAATTGCCATCTTCCATGAAGAATCTGATAGGGATTGATTCGAGGTATAACAAAGTTATTGAACTCATTGGCAAAGAGAAGGATGATGTTCGCTTCATAGGCATATGTGGAATGGGCGGCATAGGTAAGACAACTGTTGCCTCCAGAGTCTGGGAAGGCATCCAAGGTGAATTTGAAGCGAGTGGTTTTTTTGCCGATGTAAAGGAGATCTTTGAGAAAGAAGGCATTGTTGCAGCACAGAAAAGACTTCTTAATTGTATGAGGATAGAGGCAATTGGTTTTTCTAATGAGAATGACGGAAGACGTATAATTCATGACTCTTTATGCAATAAGAAGGTCTTGCTTGTCCTCGATAATGTAGACACGAAAGTCCAATTGCAGAATTTGGCTGGTGAAAAAGGTTGGTTTGGTTCTGGAAGCAGAATAATATTCACAAGCAGAGATAAAAATTTACTGCATGAGTGGTGTGGAGAGAATGAAATTTACATGCTCAAAGGGTTAGAGCAAATAGAAGCACTTCAACTTTTTAGTTTGAATGCTTTCGGATGCTTAAATCCTGAAGAAGAGAATGTGAATATGTCCAAAGAAGTAGTTGGATATTGTGATGGTCTTCCATTAGCACTAAAAGTATTAGGTTGCCATTTTCGTGGAAGACCCATTGATATATGGCGTGATGATATTCTCAAATTAAAGAGGGGTCTTAAAAAAGATATTTTTTGTAAATTGAAAATAAGTTATGATGGTTTAGATAGGATGGACAAAGACATCTTTTTAGACATCGCTTGTTTTTTCAGAGGAGAGCATGTAGATGTTGTTCAAAACATATTACAACATTGTGATTATAATGCTAAAAGTGGTATAGCTACTTTGATCGATAGATCTTTGGTCACTCTAAATGAGAATGGTAGGTTGGAGATGCATGATTTGCTTGAAGAAATGGGCAAACAAATTGAAATTGAAAAATCTCCATATGATCCTGACAAGCGTGACAGGTTGTGGTCTGCCAAGGATGCTGATGATGTACTAACACAAGAACAGGAAACTGAAACTACTCGTAGCATCGTTCTAAAGCTAAACAGTCAGTATAACATTTTGGATAAACACTTTGAAAGGCGTTGGAGAGATTTAGCTTTCTCAAATATACGCCGGCTAAAGCTCCTCATCTTAAATGGAGTGAAAGTTCCCATTGTAACAAAGATTCCTATCTCATTAAAAGTTTTGCACTGGATGTTTTTTCCAATGAAAAACCTGCCCCTCGAAGATAAACGGTACTATAAACTTGTTCAGATTCGTCTGTCTTTGGGTGACGATTTAAAACACGTGTGGCAGGGAAATAAGCGTCTAGAAAATCTGAAGTCCTTACATCTGTCATGGTGTCGAAATTTGGAGGCAACACCAGATTTTTCAGGGGCTCCCAATCTTGAAATACTTGAGATTCGGAATTGTTATAACCTGGATAAGATTGACCCGTCTCTCGTATGCCACAAGAAGCTTGTTGCATTGACTATATCGAGATGTGCCCGACTTGAAACAATTCCATCTAAATTGGAGATGAGTTCGCTCCAGGAACTAAAACTCGAAGAATGCGACAAGTTGGAGATACTCCCAGAATTCGGAGAATGCATGAGACATTTGTCTAGTCTTACTTTGTGTGTACTACCCATAAAAGAGCTACCCTCATCACTTGGATGTTTAGTTGGCCTATCAGAGTTGAAGATAAGTCGATGCCACGAGCTTACTTGCCTTCCAGACAGCATTCATGGTTTGAAGTCCCTCACACTTCTGGATGTTTTTAGCTGCCCTAGTCTCCTTGCATATCTGCATCTGTTCTCTAGTTTGACCTCTTTGACTAGTCTAACCATACGCAACTGTTATCTAATGGGGCCATTTCCTGACAATGTTGGTCACTTTCAGTGGTTGATAGATTTGGATTTATCTGATAACAATTTTGTCAGTGTTCCAATAAGGATCCATGAGCTTCCCAGGCTTACAAGTCTTAAACTATATGGTTGCCGATACCTGAACCTTTTGCCAGAGCTTCCATCAAGTCTAAGAGAATTACACGTACCAGATTGTAAATCACTGCAGGATGCATCCAATGTCAACAATGTTGTATCAAAGTTGTGCTATGCCTTTGCAGACTCATCCATGCATGATGGTGATGTCTTTCAAATGTATATGGCCGGGGAAACAATACCGTCATGGTTTAACCTTCAGGAACAAGGTGATGGAGTATCAGTTCCATTCCTAGATAATTGCGCTTCTGAAACCAAGGTACTTGCTCTCTGTTTCCAAATTTATGGCTATTGGAATGGGCCATTTAAGTTACAGCCTTCCTTGATCTTCAACGGTAAATCCATCAACAAGACTTCAATTCAGATAAGGGCTTCAGGAGGTAATTCTCATCATTTCATTCTCTTCTTGACCAATGACTATTCTCATGAACTCTTGCCGCGCAACTGCTTTGAACTGTTAATTCCGGGTCATAATCTTATGAAAGTAAAGAGCTCTGGGGCCCGTTGGGTGAGTAAAGGAGAGATTGAAGAGTTCATGAAAAGTGAACCTGAAAAGTGA	3138	0.4028	MPSEVGESSHSSTPASQRSCTHQVFLSFRGKDTRKGFTSHLYAALVNRGITTYIDDQLRKGKVMSQELVKAIEESMFAVIVFSPNFASSSWCLDEVVKIVECKEKLGLGIVAVFYRVDPCVVRHQKKTFRKNFKIHEIRYKVPKEKLETWKAALRKVAGRSGWVTKEYRNDHELVQSIAQHVHEELIRKLPSSMKNLIGIDSRYNKVIELIGKEKDDVRFIGICGMGGIGKTTVASRVWEGIQGEFEASGFFADVKEIFEKEGIVAAQKRLLNCMRIEAIGFSNENDGRRIIHDSLCNKKVLLVLDNVDTKVQLQNLAGEKGWFGSGSRIIFTSRDKNLLHEWCGENEIYMLKGLEQIEALQLFSLNAFGCLNPEEENVNMSKEVVGYCDGLPLALKVLGCHFRGRPIDIWRDDILKLKRGLKKDIFCKLKISYDGLDRMDKDIFLDIACFFRGEHVDVVQNILQHCDYNAKSGIATLIDRSLVTLNENGRLEMHDLLEEMGKQIEIEKSPYDPDKRDRLWSAKDADDVLTQEQETETTRSIVLKLNSQYNILDKHFERRWRDLAFSNIRRLKLLILNGVKVPIVTKIPISLKVLHWMFFPMKNLPLEDKRYYKLVQIRLSLGDDLKHVWQGNKRLENLKSLHLSWCRNLEATPDFSGAPNLEILEIRNCYNLDKIDPSLVCHKKLVALTISRCARLETIPSKLEMSSLQELKLEECDKLEILPEFGECMRHLSSLTLCVLPIKELPSSLGCLVGLSELKISRCHELTCLPDSIHGLKSLTLLDVFSCPSLLAYLHLFSSLTSLTSLTIRNCYLMGPFPDNVGHFQWLIDLDLSDNNFVSVPIRIHELPRLTSLKLYGCRYLNLLPELPSSLRELHVPDCKSLQDASNVNNVVSKLCYAFADSSMHDGDVFQMYMAGETIPSWFNLQEQGDGVSVPFLDNCASETKVLALCFQIYGYWNGPFKLQPSLIFNGKSINKTSIQIRASGGNSHHFILFLTNDYSHELLPRNCFELLIPGHNLMKVKSSGARWVSKGEIEEFMKSEPEK	1045

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90771g00001	1045	SMART	till_3	21	160	IPR000157	GO:0007165
	Stsc90771g00001	1045	Gene3D	Ribonuclease Inhibitor	728	897	IPR032675	-
	Stsc90771g00001	1045	Gene3D	Ribonuclease Inhibitor	543	727	IPR032675	-
	Stsc90771g00001	1045	Pfam	TIR domain	22	192	IPR000157	GO:0007165
	Stsc90771g00001	1045	Gene3D	-	354	438	IPR042197	-
	Stsc90771g00001	1045	SUPERFAMILY	Toll/Interleukin receptor TIR domain	13	163	IPR035897	-
	Stsc90771g00001	1045	PRINTS	Disease resistance protein signature	634	650	-	-
	Stsc90771g00001	1045	PRINTS	Disease resistance protein signature	389	403	-	-
	Stsc90771g00001	1045	PRINTS	Disease resistance protein signature	220	235	-	-
	Stsc90771g00001	1045	PRINTS	Disease resistance protein signature	295	309	-	-
	Stsc90771g00001	1045	SUPERFAMILY	L domain-like	563	891	-	-
	Stsc90771g00001	1045	Gene3D	-	185	349	IPR027417	-
	Stsc90771g00001	1045	ProSiteProfiles	TIR domain profile.	20	186	IPR000157	GO:0007165
	Stsc90771g00001	1045	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	182	448	IPR027417	-
	Stsc90771g00001	1045	Gene3D	-	19	184	IPR035897	-
	Stsc90771g00001	1045	Pfam	NB-ARC domain	204	404	IPR002182	GO:0043531
	Stsc90771g00001	1045	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	22	726	IPR044974	GO:0006952
	Stsc90771g00001	1045	FunFam	Disease resistance protein (TIR-NBS-LRR class)	18	188	-	-
	Stsc90771g00001	1045	SUPERFAMILY	"Winged helix" DNA-binding domain	426	530	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90771g00001	Stsc-Chr90771	7708	14130	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90771g00001	198	884	WRKY Transcription Factor Family	AT5G45050	30.380	3.31e-71	257

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90771g00001	-		-	adu:107485884	972.615