Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90770g00011 ATGGATTATTTACTTCAAAATGAACCAACAATTCGAATGGCTCTCTTACTCGCCATCCCAATTCTAATTCTTCTCCCTTTGTTATCACGAAAGCTTCGTCAAACGACGCCGTTTCCTCCAGGCCCAAAGGGGCTACCAATCATCGGAAACATGAACATCATGGACCAACTTACACACAGGGGTCTTGCCAACCTGGCAAAACAATACGGCGGCGTTTTGCACCTCCGAATTGGGTTCCGCCACATGGTAGCAATTTCAAACCCGGAGGCGGCACGCCAAGTACTCCAGGTTCACGATAATATCTTCTCCAACCGCCCCGCCACCATAGCCATAACTTACCTGACTTACGACCGTGCTGACATGGCTTTCGCTCACTACGGCCCCTTCTGGCGTCAGATGCGTAAGCTCTGCGTCATGAAGCTGTTCAGCCGTAAGCGAGCGGAGTCATGGCAGTCCGTGAGGGACGAAGTCAATACCGCAGTTAAAACCATCGGTAAAAACCTCGGGAATCCCGTGAACGTTGGTGAGGTTGTGTTCAGTCTCACCAAAAATATTATTTATAGGGCCGCGTTCGGGTCTAGCTCGCAAGAAGGTCAAGACGAGTTCATTTCTATATTGCAAGAGTTCTCTAAGCTATTTGGAGCTTTCAATCTTGCAGATTTCATCCCGTATCTCGGGTGGATTGATCCGCAAGGAATCAACGCCCGGCTTGTGAAAGCGCGCGGGGCGTTGGACGGATTCATAGACAAGATTATTGATGAACATGTGGAGAAGAACAGAAAAGGTGGTGATGGTGAAGAAAGTGATATGGTTGATGAGTTGTTGGCGTTTTACGGTGAGGAGGCTAAGTTGAATAACGAATCTGATGATTTGCAGAACTCCATCAGACTAACGAAGGATAATATCAAAGCCATAATCATGGATGTGATGTTCGGAGGCACAGAAACAGTGGCATCAGCAATAGAATGGGCGATGGCAGAACTCATGAGAAGCCCTAGTGACCTCAAGCGTGTGCAACAAGAACTCGCCAGTGTCGTAGGCCTCGATCGCCACGTGGAGGAGTCGGACTTCGAGAAGCTTCCCTACCTCAAATGTGTCATCAAAGAGACCTTGCGCCTCCACCCACCAATCCCACTCCTCCTCCACGAGACGGCGGAAGATTCAACCGTCTCCGGTTACTTCGTCCCCAAGGGATCACGCGTGATGATCAATGCATGGGCAATAGGGAGGGACAAAGACTCATGGGAGGACCCTGAAACTTTTAGGCCTTCACGGTTCTTAGACCAAGGCGTGGCGGATTTCAAAGGTAGCAACTTCGAGTTTATTCCGTTTGGGTCCGGTCGGAGATCATGTCCCGGGATGCAATTAGGGCTTTATGCGCTAGAGTTAGCGGTGGCCCACCTTCTCCATTGCTTCACGTGGGAGTTGCCCGATGGCAAGAAGCCGAGCGAGATGGACATGGGTGATGTGTTTGGACTCACTGCTCCTCTAGCGAATCGTCTCATCGCTGTTCCCACGAAGCGTGTGGTGTGCCCTCTTTAA 1542 0.5032 MDYLLQNEPTIRMALLLAIPILILLPLLSRKLRQTTPFPPGPKGLPIIGNMNIMDQLTHRGLANLAKQYGGVLHLRIGFRHMVAISNPEAARQVLQVHDNIFSNRPATIAITYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWQSVRDEVNTAVKTIGKNLGNPVNVGEVVFSLTKNIIYRAAFGSSSQEGQDEFISILQEFSKLFGAFNLADFIPYLGWIDPQGINARLVKARGALDGFIDKIIDEHVEKNRKGGDGEESDMVDELLAFYGEEAKLNNESDDLQNSIRLTKDNIKAIIMDVMFGGTETVASAIEWAMAELMRSPSDLKRVQQELASVVGLDRHVEESDFEKLPYLKCVIKETLRLHPPIPLLLHETAEDSTVSGYFVPKGSRVMINAWAIGRDKDSWEDPETFRPSRFLDQGVADFKGSNFEFIPFGSGRRSCPGMQLGLYALELAVAHLLHCFTWELPDGKKPSEMDMGDVFGLTAPLANRLIAVPTKRVVCPL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90770g00011 513 PANTHER CYTOCHROME P450 84A1-RELATED 13 513 - -
Stsc90770g00011 513 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 444 453 IPR017972 GO:0005506|GO:0016705
Stsc90770g00011 513 Pfam Cytochrome P450 39 495 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90770g00011 513 FunFam Cytochrome P450 84A1 31 507 - -
Stsc90770g00011 513 Gene3D Cytochrome P450 31 502 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90770g00011 513 SUPERFAMILY Cytochrome P450 39 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90770g00011 513 Coils Coil 281 301 - -
Stsc90770g00011 513 CDD CYP71-like 68 501 - -
Stsc90770g00011 513 PRINTS E-class P450 group I signature 181 199 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90770g00011 513 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90770g00011 513 PRINTS E-class P450 group I signature 441 451 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90770g00011 513 PRINTS E-class P450 group I signature 364 382 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90770g00011 513 PRINTS E-class P450 group I signature 301 318 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90770g00011 513 PRINTS E-class P450 group I signature 90 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90770g00011 513 PRINTS E-class P450 group I signature 404 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90770g00011 513 PRINTS E-class P450 group I signature 451 474 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90770g00011 513 PRINTS E-class P450 group I signature 321 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90770g00011 513 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90770g00011 513 PRINTS P450 superfamily signature 442 451 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90770g00011 513 PRINTS P450 superfamily signature 451 462 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc90770g00011 513 PRINTS P450 superfamily signature 312 329 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90770g00011 Stsc-Chr90770 77977 82937 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90770g00011 46 513 Monolignol Biosynthesis Gene Families AT4G36220 77.167 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90770g00011 K09755 - gmx:100793538 827.009