Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90769g00004 ATGGAGCAGTTGGACATATCNNNNNNNNNNGGATATTCAACTGCTCTTCATCATTCATCCCTTTCACCTCATGAAAAGCACTCTACAAATGCTCACATTATTTCACATTCATCGACTAACATGGCTACATTGCCACTGTATTCTTCAAATAATGGACCACTACCTCCTAAACCATCAAGCCATTTTTCTAATGAAAACAGTGCCTCCTGGCATACAGAATCTGTGCCAAGCTTTCTGGATTTTACTGCAAATACTTCTGTTGATACTGGTAGGGTAGAAAGTGATGCCTGCACTATCATGGCATCCGAGGAATATTCTAAGCGAAATGATTGGCAGGAGTGGGCTGACCAGCTAATCAGTGATGATGACACTTTAACTTCTAATTTGAATGACCTTCTTGCTGATAATGTTCCGGATCTTGAGCCAAAGGAGCTATTCCAGGTTTCAAAACCATCTTTGCAATTACCTGGACATCCATCCCAAGGTGATCAACAACTTCCTGCTTCATCTGGAGAAAATTGCACTGGTGCTGCCCCATCTTCCTCAGCAAATTCTGCTCCTGCCAAGCCACGAATGCGTTGGACTCCAGAACTTCATGAGGCCTTTGTGGATGCTGTCAACCAACTTGGTGGCAGTGAAAGAGCTACTCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGTTTAACTATATATCATGTTAAAAGCCACTTGCAGAAATACAGGACAGCTAGATATAGACCCGACTCATCTGAAGGAGTCTCAGAGAAAAAAACGAGTTCCATCGAAGAGATGTCATCTCTAGATTTGAAAACTGGCATTGATATCACTGAAGCTCTGCGACTGCAAATGGTGGTTCAGAAGCAGTTGCATGAACAACTTGAGATTCAAAGAAATCTGCAGTTGCGAATAGAAGAACAAGGAAGGTACCTCCAGATGATGTTTGAGAAGCAGTGTAAACCCGGCACTGAAATGTTTAAGGCATCATCTTCTACTGCTGAGAATCCATCTGGAGCCTCTTTAGATGCCATGCAAGATGTTCCAGCTAAAAGTGAAAAGGAAGCATCAAAAGTGGACAATTGCAAGCCAGGACATGATCAAGCTAACAGCAGCACTGCAGTTGCAGAAGGTTCAGCGGAAATGGGAGGGAAGCATGGTTCTCCCAAAATACTTTCCGAGAATCATAAGCAGCCTGCCAATGCTAATGCTAATGATGATAGCGCTCAAGCCTCAAAGCGTCCAAGAACAGATGAGTAA 1257 0.4304 MEQLDISXXXGYSTALHHSSLSPHEKHSTNAHIISHSSTNMATLPLYSSNNGPLPPKPSSHFSNENSASWHTESVPSFLDFTANTSVDTGRVESDACTIMASEEYSKRNDWQEWADQLISDDDTLTSNLNDLLADNVPDLEPKELFQVSKPSLQLPGHPSQGDQQLPASSGENCTGAAPSSSANSAPAKPRMRWTPELHEAFVDAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPDSSEGVSEKKTSSIEEMSSLDLKTGIDITEALRLQMVVQKQLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKPGTEMFKASSSTAENPSGASLDAMQDVPAKSEKEASKVDNCKPGHDQANSSTAVAEGSAEMGGKHGSPKILSENHKQPANANANDDSAQASKRPRTDE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90769g00004 418 SUPERFAMILY Homeodomain-like 187 243 IPR009057 -
Stsc90769g00004 418 MobiDBLite consensus disorder prediction 347 361 - -
Stsc90769g00004 418 Pfam Myb-like DNA-binding domain 191 242 IPR001005 -
Stsc90769g00004 418 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 246 IPR017930 -
Stsc90769g00004 418 NCBIfam myb-like DNA-binding domain, SHAQKYF class 189 243 IPR006447 GO:0003677
Stsc90769g00004 418 Pfam MYB-CC type transfactor, LHEQLE motif 275 320 IPR025756 -
Stsc90769g00004 418 Gene3D - 188 247 - -
Stsc90769g00004 418 MobiDBLite consensus disorder prediction 322 418 - -
Stsc90769g00004 418 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 165 398 IPR044848 GO:0003700
Stsc90769g00004 418 MobiDBLite consensus disorder prediction 393 409 - -
Stsc90769g00004 418 MobiDBLite consensus disorder prediction 143 193 - -
Stsc90769g00004 418 MobiDBLite consensus disorder prediction 15 68 - -
Stsc90769g00004 418 MobiDBLite consensus disorder prediction 153 188 - -
Stsc90769g00004 418 FunFam Myb family transcription factor 188 246 - -
Stsc90769g00004 418 MobiDBLite consensus disorder prediction 324 339 - -
Stsc90769g00004 418 MobiDBLite consensus disorder prediction 32 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90769g00004 Stsc-Chr90769 47953 52753 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90769g00004 7 362 G2-like Transcription Factor Family AT4G28610 49.307 9.22e-93 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Stsc90769g00004 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90769g00004 - - aip:107624999 680.633