Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90767g00004 ATGTCCATTCACGATCAGAATCAAGTTACCGCAGCACAGGGTAGTCCTCCCGTAGGAAATAGAGTATCTTCGGATTCTGAATTGCATTCTGTTTCAAATATTCAACTCAGTGACCAATTTTCAACTACAAATGATGGTGTTCTCAAGGTGAGGAAACCATACACCATCAAAAAACAAAGAGAGAGGTGGACAGATGAAGAACACAAGAAGTTCCTTGAGGCTTTAAAGCTGCATGGCCGGGCCTGGCGTCGTATTGAAGAACATGTTGGCACAAAGACTGCTGTTCAGATTAGAAGTCATGCTCAGAAGTTTTTTTCTAAGGTTCTTCGTGACTCCAGTGGTAAGATTATCAACTCTGCAGAGTCAATTGAAATTCCTCCTCCAAGACCAAAACGAAAGCCGATGCATCCTTACCCCCGTAAGCTAGTAGAGACTCCTAACAAAATAACTTCGGTCAAAGAGCAGCCGAACAGGAGGTCTAATTCTCTGAAGTCACAAGCAGATTTTGATCAAGAGAACCAATCTCCCAAATCAGTGTTAACTGGAGTTGGTTCAGACAGTAGTCTTGGTTCCTCAGATTCAAGCGGCTTTACACTTGTGGAACCCAAAACCCCATCCGAGGAAACTGGACTAAATGCCGATTCAGCTCACAATGATCACCCTCTTGCGAAATCCAATAAGGAAATCAAAGAAAGCATGGAAGAAGAATCGTTTGGTCGGACTGTAAAGCTTTTTGGGATGACTCTATCGGTAACAAACACATGCAGAGCCTCACTTCCATCAACTGAGGCATGCAAACCAATACCTGTACACATAAATGTGCATTGCTTTGGCAAGGGGGAAGGGAAATTGGAACTTCCTAGCCACATTGTTCCAAGTGATGATACTAGAGCAACATCCAAGCTGAGGATTAGAATGAGAACTGAAACATGTGGGAGAGGTTTTGTGCCATATAAAAGGTGCATGGCTGAGAGAGAAAAAAGCCACTCTTCCACGGATAAGAGGGAAGAGCAAGTCATCCAGCTTTCGTTATAG 1035 0.4348 MSIHDQNQVTAAQGSPPVGNRVSSDSELHSVSNIQLSDQFSTTNDGVLKVRKPYTIKKQRERWTDEEHKKFLEALKLHGRAWRRIEEHVGTKTAVQIRSHAQKFFSKVLRDSSGKIINSAESIEIPPPRPKRKPMHPYPRKLVETPNKITSVKEQPNRRSNSLKSQADFDQENQSPKSVLTGVGSDSSLGSSDSSGFTLVEPKTPSEETGLNADSAHNDHPLAKSNKEIKESMEEESFGRTVKLFGMTLSVTNTCRASLPSTEACKPIPVHINVHCFGKGEGKLELPSHIVPSDDTRATSKLRIRMRTETCGRGFVPYKRCMAEREKSHSSTDKREEQVIQLSL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90767g00004 344 ProSiteProfiles SANT domain profile. 58 109 IPR017884 -
Stsc90767g00004 344 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Stsc90767g00004 344 SUPERFAMILY Homeodomain-like 54 107 IPR009057 -
Stsc90767g00004 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Stsc90767g00004 344 NCBIfam myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Stsc90767g00004 344 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Stsc90767g00004 344 Gene3D - 62 108 - -
Stsc90767g00004 344 SMART sant 59 107 IPR001005 -
Stsc90767g00004 344 PANTHER SWI/SNF COMPLEX-RELATED 36 261 - -
Stsc90767g00004 344 MobiDBLite consensus disorder prediction 1 36 - -
Stsc90767g00004 344 MobiDBLite consensus disorder prediction 119 223 - -
Stsc90767g00004 344 MobiDBLite consensus disorder prediction 148 202 - -
Stsc90767g00004 344 CDD SANT 62 105 IPR001005 -
Stsc90767g00004 344 MobiDBLite consensus disorder prediction 324 344 - -
Stsc90767g00004 344 Pfam Myb-like DNA-binding domain 60 103 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90767g00004 Stsc-Chr90767 9392 12925 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc90767g00004 Myb_DNA-binding 5.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90767g00004 - - lang:109345156 376.326