Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90767g00003 ATGCAAATCTCAGTATCTACTATAATCGCCATCTTCTCCATCACAATAGTAACCCTCACTTCACCATCCACCTCTCTCTACTATTCTCCTTCACCTCCCGCGGCGCCTTTTAACTCTTCTTCTCATTCCTCTCTGCCTTCTCCTCCTTATGAGGAATGGCTGTCCGCACATGCAACCTACTATACCTCCTCCAATTCCACCGACGCGCTTGGAGGCGCGTGCGGCTACTCTGACGGCAAAGGTGCGGCGGCCGCGGCGATCCTCAGCCAGGCGCTGTTTGAGCAGGGACAGATCTGTGGTGCGTGCTTCGAGCTCCGGTGCGCCGAGGAGGATTCTCCGTTCGACCGGCGGTGGTGCATCCCTGGAAGGTCGGTGATGGTAACGGCGACGGACTTCTGTGCACCTAACTACGGGGTGGAGGCCGACGGGGAGAGCGGCGGTGGTAGGTGCAACCCTCCGAAGCAGCACTTCGTGGTCCCCATTGACACGTTGGAGAAGATCGCGATCTGGAAGCAAGGGAACTTGCCGGTACAGTATCGTAGGATAAAGTGCAGAAGGGAAGGAGGAATCCGATTCACGATGGCTGGCTCTGGGATCTTCATTTCTGTGCTGATCAGCAATGTGGCTGGGACAGGAGATATTGTTGCTGTGAAGGTTAAGGGTTCAAAAACTGGCTGGCTTCCTATGGGGCGGAACTGGGGCCAAAACTGGCATGTAAGCGCCTTGCTACAGAACCAACCTCTTTCATTCGAGGTTACTTCCAGTGATGGTGCCACACTTACATCTTACAATGTTGCTCCCAAGCATTGGACCTTTGGACAAACCTTTGAAGGCAAGCAATTTGAGCCTTAA 852 0.5411 MQISVSTIIAIFSITIVTLTSPSTSLYYSPSPPAAPFNSSSHSSLPSPPYEEWLSAHATYYTSSNSTDALGGACGYSDGKGAAAAAILSQALFEQGQICGACFELRCAEEDSPFDRRWCIPGRSVMVTATDFCAPNYGVEADGESGGGRCNPPKQHFVVPIDTLEKIAIWKQGNLPVQYRRIKCRREGGIRFTMAGSGIFISVLISNVAGTGDIVAVKVKGSKTGWLPMGRNWGQNWHVSALLQNQPLSFEVTSSDGATLTSYNVAPKHWTFGQTFEGKQFEP 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90767g00003 283 Pfam Expansin C-terminal domain 190 267 IPR007117 -
Stsc90767g00003 283 CDD DPBB_EXPA_N 52 184 - -
Stsc90767g00003 283 PRINTS Expansin signature 200 221 IPR002963 GO:0009664
Stsc90767g00003 283 PRINTS Expansin signature 188 200 IPR002963 GO:0009664
Stsc90767g00003 283 PRINTS Expansin signature 125 135 IPR002963 GO:0009664
Stsc90767g00003 283 PRINTS Expansin signature 235 256 IPR002963 GO:0009664
Stsc90767g00003 283 PRINTS Expansin signature 264 280 IPR002963 GO:0009664
Stsc90767g00003 283 PRINTS Expansin signature 80 94 IPR002963 GO:0009664
Stsc90767g00003 283 PANTHER EXPANSIN-A15 24 281 IPR002963 GO:0009664
Stsc90767g00003 283 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Stsc90767g00003 283 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Stsc90767g00003 283 PRINTS Expansin/Lol pI family signature 52 67 IPR007118 GO:0005576
Stsc90767g00003 283 PRINTS Expansin/Lol pI family signature 172 188 IPR007118 GO:0005576
Stsc90767g00003 283 PRINTS Expansin/Lol pI family signature 264 278 IPR007118 GO:0005576
Stsc90767g00003 283 SUPERFAMILY PHL pollen allergen 186 278 IPR036749 -
Stsc90767g00003 283 Gene3D - 38 185 IPR036908 -
Stsc90767g00003 283 Pfam Lytic transglycolase 87 179 IPR009009 -
Stsc90767g00003 283 SUPERFAMILY Barwin-like endoglucanases 52 207 IPR036908 -
Stsc90767g00003 283 SMART dpbb_1 85 179 IPR007112 -
Stsc90767g00003 283 Gene3D - 190 281 IPR036749 -
Stsc90767g00003 283 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 71 189 IPR007112 -
Stsc90767g00003 283 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 199 278 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90767g00003 Stsc-Chr90767 6893 9160 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90767g00003 52 282 Expansin Gene Family AT3G03220 68.085 1.89e-118 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90767g00003 - - adu:107481013 491.115