Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90766g00015 ATGGCTTCCGAGGCCACCACCTCCAAAGGCACCGCGCCGCCTCGGTCGCTCACGGCAGCCGAAACGCAGTATTCGTCCGCGAAGGTATCAGTATGGTGGGACATAGAGAACTGCCCGGTGTCTCGTGGCTGCGACGCGCATTCCATCGCAAAGAACATCAGTTCCGCTCTGGTTCGCATGAACTATTGCGGCCCCGTCTCCATCTCTGCGTACGGCGACACCCACCGCATTCCGCCGTCTATACAGCACGCGCTCTCCAGCACCGGCATTTCCCTCAACCACGTCCCCGCAGGTGTGAAAGATGCAAGTGACAAGAAGATTTTAGTTGATATGCTTTTCTGGGCGGTGGACAACCCTGCTCCTGCAAATTATTTGCTTATTTCTGGAGATAGGGATTTTTCGAGTGCCCTGCATCAACTGCGTTTGAGAAGGTATAACATTCTTCTTGCTCAACCGGTAAAAGCATCCGCGCCGCTCATTGCTGCTGCTCGGAGTGTGTGGCTCTGGACTAGTCTTTCTGCCGGTGGCCCACCGCTACCCGGTAGTCCTGGAACGGTTCAAAACCCTCTTCCATCTCAACCTAGATGCAAAGAAAAATACACCAACAGCAATGCAGGTCAGAGCAACGTATCAGGGACTTCAAGCATGCCAATTCAATTGCCAGAGAGTAAGAGTAAGGACAGTCATTGCTCTAATCCGGAACTTCCACAGGCAAAGTTGTTTCCCAGAGCTCCCCATGAATTCTTTAGTAATAAGCTGAATGCCGCAACTGTTAGTTCTACATCTAGTCTTCCAAGCAATCAAGACCATCAGGAATCTAGACAAGATTATAGAGCAAGTACTAGTAATAACTCACATGGAAGCCAAGCATCTCGTTATGAGAATGTGGACAAGGGGTCTTCTTACAATTCTGAGCAGTCTAGCAATACCTGGGGAGCTAAAATTCTACGACCACCTTCTGAGTATGACCAACATCTTATAGGCTGCATTCTATTAACTTTAAACACTCTGAAGGTTGAAATGGTTATGCCTACTCATGGAAATATTTCCAATTGCATCCGATACGGAGATCCCAGATATCGGAAAACTGATGTCAGGAAAGCTTTAGATTGTGCAATAGAGCATGGCATGGTAGTAAAACAAAGCTTAGGTTCATTGAGTTTGTATGTTAATAAAAATGTGCAACTCTGGAAGTGTGTGAACCCTGTTGGTGGTTATCCGAATGATTTCTCAGACGCAACATGGGCTAGAATACATCAATTCCTTTCATCACCGGCTGGAAAATCGTCAATTTCGGCATCCCGTTGCAGATACGAAGCATCGCTAATTCTTAGGAGATTATGCATGGAAGAGGAGGTTTTAGGTAATGTACTTAAGATTCTGGAGATGATAATCTCGATCAAGAAGTGGATTATACATAACCAGTCCGGGTGGCAGCCAATTACTATTACACTTTAG 1458 0.4678 MASEATTSKGTAPPRSLTAAETQYSSAKVSVWWDIENCPVSRGCDAHSIAKNISSALVRMNYCGPVSISAYGDTHRIPPSIQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSSALHQLRLRRYNILLAQPVKASAPLIAAARSVWLWTSLSAGGPPLPGSPGTVQNPLPSQPRCKEKYTNSNAGQSNVSGTSSMPIQLPESKSKDSHCSNPELPQAKLFPRAPHEFFSNKLNAATVSSTSSLPSNQDHQESRQDYRASTSNNSHGSQASRYENVDKGSSYNSEQSSNTWGAKILRPPSEYDQHLIGCILLTLNTLKVEMVMPTHGNISNCIRYGDPRYRKTDVRKALDCAIEHGMVVKQSLGSLSLYVNKNVQLWKCVNPVGGYPNDFSDATWARIHQFLSSPAGKSSISASRCRYEASLILRRLCMEEEVLGNVLKILEMIISIKKWIIHNQSGWQPITITL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90766g00015 485 PANTHER LIMKAIN B LKAP 22 366 IPR024768 GO:0005777|GO:0010468
Stsc90766g00015 485 MobiDBLite consensus disorder prediction 259 309 - -
Stsc90766g00015 485 CDD PIN_limkain_b1_N_like 28 152 - -
Stsc90766g00015 485 MobiDBLite consensus disorder prediction 188 232 - -
Stsc90766g00015 485 MobiDBLite consensus disorder prediction 277 309 - -
Stsc90766g00015 485 Gene3D - 19 171 - -
Stsc90766g00015 485 MobiDBLite consensus disorder prediction 179 237 - -
Stsc90766g00015 485 Pfam NYN domain 28 164 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90766g00015 Stsc-Chr90766 76353 78366 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90766g00015 17 179 C2H2 Transcription Factor Family AT5G61190 76.074 1.86e-82 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90766g00015 - K17573 aip:107646579 752.666