Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90766g00012 ATGGAAGCTAGATTTGGTACTGAAGCTCTTCAATTCTATGCTATGGGTGGGTCCTCAGTGGGGAAGAGGTCCATGGAGTGGGATTTGAATGATTGGAAATGGGACGGAGATTTATTCATAGCTAGGCCTTTGAATCCTGGACCTGAACACAGGCAATTCTTCCCTGCTGGTACTGGGATCCCTCTTTCTGGGGGTCCTTCCAACTCTAATAGCTCATCCTCGTGTTCCGATGAGGTAGATCTCGGGATTCGTGGAGGGAACAAGGAAGGGGACAAGAAAAGGAGGGTTGTTGTGCTGGAGGATGATGCTTTGAATGAGGAATCTGGTACCCTTAGCTTAAAGCTTGGCGGTGGCAGCGGCGGGCATGGTGGTGCCCATGTTGGTAGCTGGGAAGGAGTGAACGGAAAGAAGAGCAGAGTAGCTGGAGGCAATTCGAATCGGGCTGTTTGCCAGGTGGAGGATTGTGGTGCAGATCTCAGCAATGCTAAAGATTATCACAGGCGCCATAAGGTTTGTGAGATGCACTCCAAGGCCACCAAGGCACTCGTGGGAAATGCAATGCAACGATTCTGCCAACAATGTAGTAGGTTTCATATGCTCCAAGAATTTGATGAAGGAAAGAGAAGCTGTCGAAGACGTTTGGCAGGCCACAATAAGAGGAGGAGGAAAACAAATAATGATGCTGTTCCTAATGCAAGTTCACTAAATGATGATCAGACAAGTAGTTACCTTCTGATAAGTTTATTGAAGATACTTTCAAACATGCATTCTGACAGGTCAGACCAGACCACGGATCAGGATCTTTTGACTCACTTGCTTAGGAGTCTTGCTAGTCAAGGTGGTGATCAAGGGGGTAAGAACTTGTCAAACCTTTTGGCTCAACCAGAGAATCTGTTGAAAGAAGGGAGCTCATCTGGGAAGTCTGAGAATGTTTCTACTTTACTCTCAAATGGATCTCAAGGCTCTCCATCTGTAATACAACAGCATCAAACAGTTTCTGTAGCTGAACTCCAACATCAGGTGATGCATGCACATGATGTTATGCCCACTGATCAAATCATGTCTTCTACAAAGCCCAGTGCTTCAAATAGTCCTCCAACTTACTCAGAAGCCAGAGACAGTACTGCTGGACAGACAAAGATAAACAATTTTGATTTGAATGACATATATATCGACTCAGATGATGGCATAGAAGATATTGAAAAGTTGCCTGTCTCTGCTAATCTTGGTACTAGCTCTCTTGAATACCCATGGACACAACAAGACTCTCATCAGTCAAGTCCACCTCAAACAAGTGGCAACTCAGATTCTGCATCTGCTCAGTCCCCTAGTAGTTCTAGTGGAGAAGCTCAGAGTCGCACAGATCGAATCGTTTTCAAACTATTTGGCAAAGAACCAAATGATTTCCCTCTCGTACTTAGAGCACAGATTCTTGACTGGTTATCCCACAGTCCAACTGACATGGAAAGTTACATACGGCCTGGTTGTATTGTTTTGACTATTTATCTGCGCCAGTCTGAAGCTATGTGGGAGGAGCTTTACTATGATTTGACTTCCAGCTTGAGTAGGCTTCTGGATGTCTCAGATGTTGATTTTTGGAGGACTGGATGGGTTCACATCCGGGTGCAGCATCAGCTAGCATTTGTTTTCAATGCATCAAAGACCGCTCAATTTTCTGTCAAGGGTATCAACCTGAATCGCCCCGCCACTAGGTTATTGTGTGCTTTAGAAGGGAGTTATCTAGCTTGTGAAGATGCTCATGAGTCGATGGATCCAGGCTCCAAGGAGCTTGAAGAGCTTCAATGCATCCAATTTTCATGTTCTGTACCCGTGATAAATGGAAGAGGATTTATTGAGATTGAGGATCAGGCCATGGATTTCATTCATGAAATGGGTTGGCTTCTTCACAGAAGCCAATTGAGATCAAGGATGGTTCACTTGAACTCCAGTGTAGAACTCTTCCCATTAAAACGATTCAAGTGGCTCGTTGAGTTCTCTGTGGACCGTGATTGGTGTGCTGTAGTGAAAAAACTACTGAACCTACTGCTTAGTGGAATTGTGTGCACAGGAGATCACCGATCAATCCATCTTGCACTTTCAGAGATGGGTCTCCTTCATAAAGCTGTCAGGAGAAATAGCAGGCAATTGGTGGAGCTACTTTTGAGATATGTTCCCGAGAATATTTCTGACAAACTAGGATATGAAGACATGTCTCTGGTTGGTGGAGAGAACCAGAGTTTCTTGTTTAGACCTGATGCTGCTGGTCCTGCTGGTTTGACACCACTCCATATAGCAGCTGGGAAAGATGGTTCAGAGGAAGTGCTGGATGCTTTAACTGACGATCCTTGCATGGTGGGAATTGAAGCATGGAAGAGCGCTCGCGATAGCACTGGCTCCACTCCTGAGGATTATGCACGTTTACGAGGCCATTATGCTTACATTCACCTGGTGCAGAAGAAAATTAACAAGAGGCAAGGAGGGGCTCATGTTGTTGTTGACATTCCCAGCAATCTGACTGGGTTCAATACAAACCAGAAGCAAAATGAGTTAACTAGCTTCGACATTGTTGGAAAGGCTGAAGGAAGAAGTGCCCAAAAGCAGTGCAAACTATGTGATAATAAGTTGTCTTGTAGAGCTGTAGTAGGCAAGTCTCTGGTATACAGACCTGCTATGCTGTCGATGGTGGCCATAGCAGCAGTCTGTGTCTGCGTCGCGCTTCTGTTCAAGAGCTCGCCGGAAGTTCTGTACGTTTTCCGCCCATTCAGGTGGGAATCGTTGGAGTACGGAACAAGCTGA 2796 0.4546 MEARFGTEALQFYAMGGSSVGKRSMEWDLNDWKWDGDLFIARPLNPGPEHRQFFPAGTGIPLSGGPSNSNSSSSCSDEVDLGIRGGNKEGDKKRRVVVLEDDALNEESGTLSLKLGGGSGGHGGAHVGSWEGVNGKKSRVAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKATKALVGNAMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNNDAVPNASSLNDDQTSSYLLISLLKILSNMHSDRSDQTTDQDLLTHLLRSLASQGGDQGGKNLSNLLAQPENLLKEGSSSGKSENVSTLLSNGSQGSPSVIQQHQTVSVAELQHQVMHAHDVMPTDQIMSSTKPSASNSPPTYSEARDSTAGQTKINNFDLNDIYIDSDDGIEDIEKLPVSANLGTSSLEYPWTQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDMESYIRPGCIVLTIYLRQSEAMWEELYYDLTSSLSRLLDVSDVDFWRTGWVHIRVQHQLAFVFNASKTAQFSVKGINLNRPATRLLCALEGSYLACEDAHESMDPGSKELEELQCIQFSCSVPVINGRGFIEIEDQAMDFIHEMGWLLHRSQLRSRMVHLNSSVELFPLKRFKWLVEFSVDRDWCAVVKKLLNLLLSGIVCTGDHRSIHLALSEMGLLHKAVRRNSRQLVELLLRYVPENISDKLGYEDMSLVGGENQSFLFRPDAAGPAGLTPLHIAAGKDGSEEVLDALTDDPCMVGIEAWKSARDSTGSTPEDYARLRGHYAYIHLVQKKINKRQGGAHVVVDIPSNLTGFNTNQKQNELTSFDIVGKAEGRSAQKQCKLCDNKLSCRAVVGKSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWESLEYGTS 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90766g00012 931 FunFam Squamosa promoter-binding-like protein 14 141 211 - -
Stsc90766g00012 931 MobiDBLite consensus disorder prediction 214 235 - -
Stsc90766g00012 931 Gene3D - 141 211 IPR036893 GO:0003677|GO:0005634
Stsc90766g00012 931 Pfam SBP domain 150 223 IPR004333 GO:0003677
Stsc90766g00012 931 MobiDBLite consensus disorder prediction 352 376 - -
Stsc90766g00012 931 MobiDBLite consensus disorder prediction 300 329 - -
Stsc90766g00012 931 Gene3D - 673 829 IPR036770 -
Stsc90766g00012 931 MobiDBLite consensus disorder prediction 62 78 - -
Stsc90766g00012 931 SUPERFAMILY SBT domain 148 228 IPR036893 GO:0003677|GO:0005634
Stsc90766g00012 931 ProSiteProfiles Zinc finger SBP-type profile. 147 224 IPR004333 GO:0003677
Stsc90766g00012 931 MobiDBLite consensus disorder prediction 419 452 - -
Stsc90766g00012 931 SUPERFAMILY Ankyrin repeat 699 815 IPR036770 -
Stsc90766g00012 931 MobiDBLite consensus disorder prediction 60 91 - -
Stsc90766g00012 931 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 76 818 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90766g00012 Stsc-Chr90766 50115 56519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90766g00012 1 931 SBP-box Gene Family AT3G60030 52.277 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Stsc90766g00012 SBP 7.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90766g00012 - - gmx:100809806 1376.69