Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90766g00008 ATGGAGGATTGTTGTGCCGTTTGCGCCGAGCCCTTGGAATGGGTTGCCTATGGACCTTGTATGCACCGCGATGTCTGCTCCACGTGCGTCTCTCGCCTCCGATTCATATGCCACGATCGCCGTTGCTGCATCTGCAAGACCGAATGCGGCAACGTATTCGTCACCAAGGCTCTAGGAGACTATACACGGATGATTAATGATTTTTCATCCTTGCCCTCCGAACCAAAAGAGGGCAAGGTTGGATCATATTGGTACCATGAGGATACAAATGCATATTTTGATGATATGGACCATTACAAGATGATCAAGGCTATGTGCAGGCTTTCATGCAGTGTATGTGACAAGATGGATGAGCAACCGCATGATGCCTCAAAGCGCCGGCAGAGGTTTAGGAATATAGAGCAGCTGAAGGGTCACTTATTCCACCGTCATAAGTTGCTTATGTGTAGCTTATGTTTGGAGGGAAGGAAGGTATTTATATGCGAGCAAAAGCTTTATACCAGAGCACAATTGAATCAGCATATAAGCACAGGTGATTCAGAAGTGGATGGAAGTGAGAGTGAGAGAGGTGGTTTTATGGGGCATCCTATGTGTGAGTTCTGTAGAACCCCATTTTATGGGGACAATGAACTATATATGCATATGTCCACAGAACATTATACTTGTCATATATGCCAAAGGCAGCATCCAGGACAGTATGAATACTATAAAAATTATGATGACCTTGAGATCCATTTCCGTAATGAGCATTTCTTGTGTGAAGATGAAGCTTGCCTTGCTAAGAAGTTTATTGTGTTTCATTCTGAAGCAGAAATGAAGAGGCATAATGCTATTGAACATGGAGGGCGTATGTCACGTTCAAAGCGTAACGCTGCTCTTCAGATACCAACCAGCTTTCGATATAGGCGTAATGATCAAGACCAACGCCGTGGAAGAGGCCGCTCCTTTCGCCGTGATTTTTCTGAAAATCAACTTTCTATGGCCATTGAAGCCAGCTTGCAAATGGCTAACGCAGCGGAAACATTGCATGATCCATCAACTTCAAGTAGTGGATATGCTGTGGTGGATGACAGTAATGCTGATGTTGATTCTATTGTTCAGCCTTTTGAATCCTTAGCTACTTCGGGTTCTGAAGCATCTGCACGATACCTCCAAGCCTTAGGACCTAACTCGAGGAATGCAGCACTAGCAGATTCATCCTTTCCGCCACTCCCACTAGCTTCCAGCAATGACCAGCAAAGGTCCAAACAAGAGTCAGAAGGTTCATCCAGTAACACCATGGCAGCACGCTTGCGTCGGCATGGGAACAGAAAGGTTTCTGTAATTAATTCTGGTAATGCTTGGCCTGCTCCAGGTCGTGGACAATCATCAGGTAATTCTACCCAAGCTAGACTGCAATCAAATGTTGCTCCTGGAGTGCCACGCATATCTTGTCAGATGAAGACAACAAATAACAGTGGGCCTTCACCCTCAACGTATGCTAGTTCTATTCAGCCTACATCTAGAACTGCCCATGCACAATCATCTGTTGGTTCTTCGAGGGACACACGTGATAATGGAAGAATGGTTCACTCTGCATCTGCTCCAAATCTCATTGAGAGCAACCCTATTGAAGCTTCAATTTCTGATTTTCCTCCTGTTTCTGCTGCACTAGTGAGCAAGTCATCTGCCAGCACTCAGACTTCGTCGAATGTGGAAAACGTTCAGTCTGCTAACAAGTCATTGGTTGAAAAGATTCGTGGAGCTCTTGATTTTGATGAAGATAGATTCACTTTGTTTAAAGACCTATCTGGTCAATATCGTCAAGGCACAATTGATACAGAGACGTATCTGGACTATGTGCAGCAGTTTGGTTTGTCTCATCTTGTACCTGAAATGGCTAATTTATTGCCAGATGCTCAGAAGAAGGAAGAGCTCATTGCGTCCTATAACCGCACTTTGCAAAGGAATGCTTTGCCAGAAAATGGATGGGTCCGGGGTAGTTCTGGCATCCACCCCAAAGATAGTAATGCTTCCAAAAAAGGTAAAGGTAAGTCTGTAGAGGTTAATGGTAGTAACTCTACAAATAGATTAGCAGATAGCTTCTTAAGCACAGTACATCAACTACAGTCAAGCTATAAATCTTCAGAAGAGAATTTAGAGGTGCTATCAAGGGGTGATTATCGCACCAGCAAGGGCAAGTCAAAAATCAATCAGCAGATAGATACCAATTCGGGTAATCAACCTTTGAGAATCAGTGGGCAGACAGAGGCATCGGGTGGAGGTTTATCAAATCAGAAAAAGGAGGATGCTGGTGTTGGCAGCAAACAACGGAAAAAAACTTCCAAATTTCTAAGAGTACGACTTGGAGATGGTTCTGCTTCAGCCCTTCTTGATTTTGATAACTCACAGACTGAGCCAGATCCTGGAACAACAGACACTTTGCCTGGTAACAAGAATGACAATGGAGGACCACCTGTGCTAGGTGTTTGGCGAAAGGGGGGAGGCCAGAGGCTCTTCAACTGA 2505 0.4455 MEDCCAVCAEPLEWVAYGPCMHRDVCSTCVSRLRFICHDRRCCICKTECGNVFVTKALGDYTRMINDFSSLPSEPKEGKVGSYWYHEDTNAYFDDMDHYKMIKAMCRLSCSVCDKMDEQPHDASKRRQRFRNIEQLKGHLFHRHKLLMCSLCLEGRKVFICEQKLYTRAQLNQHISTGDSEVDGSESERGGFMGHPMCEFCRTPFYGDNELYMHMSTEHYTCHICQRQHPGQYEYYKNYDDLEIHFRNEHFLCEDEACLAKKFIVFHSEAEMKRHNAIEHGGRMSRSKRNAALQIPTSFRYRRNDQDQRRGRGRSFRRDFSENQLSMAIEASLQMANAAETLHDPSTSSSGYAVVDDSNADVDSIVQPFESLATSGSEASARYLQALGPNSRNAALADSSFPPLPLASSNDQQRSKQESEGSSSNTMAARLRRHGNRKVSVINSGNAWPAPGRGQSSGNSTQARLQSNVAPGVPRISCQMKTTNNSGPSPSTYASSIQPTSRTAHAQSSVGSSRDTRDNGRMVHSASAPNLIESNPIEASISDFPPVSAALVSKSSASTQTSSNVENVQSANKSLVEKIRGALDFDEDRFTLFKDLSGQYRQGTIDTETYLDYVQQFGLSHLVPEMANLLPDAQKKEELIASYNRTLQRNALPENGWVRGSSGIHPKDSNASKKGKGKSVEVNGSNSTNRLADSFLSTVHQLQSSYKSSEENLEVLSRGDYRTSKGKSKINQQIDTNSGNQPLRISGQTEASGGGLSNQKKEDAGVGSKQRKKTSKFLRVRLGDGSASALLDFDNSQTEPDPGTTDTLPGNKNDNGGPPVLGVWRKGGGQRLFN 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90766g00008 834 CDD RING-HC_ZNF598 3 54 IPR041888 -
Stsc90766g00008 834 MobiDBLite consensus disorder prediction 717 834 - -
Stsc90766g00008 834 MobiDBLite consensus disorder prediction 790 812 - -
Stsc90766g00008 834 SMART c2h2final6 108 144 IPR013087 -
Stsc90766g00008 834 SMART c2h2final6 220 250 IPR013087 -
Stsc90766g00008 834 SMART c2h2final6 196 219 IPR013087 -
Stsc90766g00008 834 SMART c2h2final6 251 280 IPR013087 -
Stsc90766g00008 834 MobiDBLite consensus disorder prediction 654 689 - -
Stsc90766g00008 834 MobiDBLite consensus disorder prediction 439 468 - -
Stsc90766g00008 834 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Stsc90766g00008 834 PANTHER ZINC FINGER PROTEIN 598 1 741 IPR044288 GO:0061630|GO:0072344
Stsc90766g00008 834 MobiDBLite consensus disorder prediction 477 516 - -
Stsc90766g00008 834 MobiDBLite consensus disorder prediction 394 522 - -
Stsc90766g00008 834 MobiDBLite consensus disorder prediction 726 756 - -
Stsc90766g00008 834 MobiDBLite consensus disorder prediction 394 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90766g00008 Stsc-Chr90766 28417 32680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90766g00008 1 829 C2H2 Transcription Factor Family AT3G62240 52.797 0.0 831
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90766g00008 K22381 - gmx:100799878 1261.51