Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90765g00018 ATGGAATTTGTGCCGAATCCGTGCCCTCTGAGATCCTCTGTGTTCGGTTCCTTCGGGGATCTCGTCGAGAGGGTCAAGCAAATTGGAACCCTCGCCGTTTCTGCCGTCATTGGCAACATCTTCTCTGCGATCTTGACCTTCTGCTTCGCATTAGTTGGGACTTTGTTGGGGGCTATGACTGGAGCTTTGATAGGACAAGAGACTGAGAGTGGCTTCATTAGAGGTGCTGCTGTTGGTGCCATATCAGGAGCTGTTTTCTCCATTGAAGTCTTTGAATCATCTCTTGTTCTTTGGCAATCTGATGAGTCCGGAATTGGGTGTCTCTTGTACCTGATTGATGTTATTGCTAGCTTAGTGAGTGGCAGACTTGTTCGTGAGAGGATAGGTCCAGCAATGTTGAGTGCTGTCCAAAGTCAGATGGGTGCTGTTGAAACCGGCTTTGACGAAGTTCAAAACATCTTTGACACTGGTGGTTCAAAGGGTTTATCTGGAGATTTGGTANNNNNNNNNNCAATAATCAAAATTACTAGTGACAACAATGTTGATGCTTCTGGTGAGAGAGTGTCTTGTTCAGTTTGCCTCCAGGACTTTCAGCTGGGAGAGACAGTTAGAAGTTTGCCTCATTGCCATCACATGTTTCACCTACCCTGCATAGACAAGTGGCTGTTTAGGCATGGTTCTTGTCCATTATGCAGAAGGGATCTGTAA 708 0.4562 MEFVPNPCPLRSSVFGSFGDLVERVKQIGTLAVSAVIGNIFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLVSGRLVRERIGPAMLSAVQSQMGAVETGFDEVQNIFDTGGSKGLSGDLVXXXXIIKITSDNNVDASGERVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90765g00018 235 SUPERFAMILY RING/U-box 183 235 - -
Stsc90765g00018 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Stsc90765g00018 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 234 IPR044523 -
Stsc90765g00018 235 SMART ring_2 190 231 IPR001841 -
Stsc90765g00018 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Stsc90765g00018 235 Pfam Ring finger domain 189 232 IPR001841 -
Stsc90765g00018 235 CDD RING-H2_NIPL1-like 189 232 - -
Stsc90765g00018 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 235 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90765g00018 Stsc-Chr90765 77841 80343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90765g00018 21 235 C3H Transcription Factor Family AT5G66070 76.744 2.55e-115 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90765g00018 - - gmx:100807641 422.935