Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90765g00009 ATGAATAATCTCAACAACTTGGTTTCAATTGTGTTCAATTTAATTGGTCTAACACAGGGACCACACAATGTCTCTTTATGTTACTTCCTATCATCTGAATCTGCGGCAGCATCTTCATCCAATGAACTCATCATGGAGAATAATGGTGAGGCTGCTTGGTGTTGTGTATGCTTGTCGAGGTTAAAGGATGAAGACGAAATCCGAGTTCTTCCTTGCCTGCACAAGTTCCACAAGATTTGTGTGAATAGATGGCTCAAAGGTCGCCACAAAACCTGTCCCCTCTGCCGGTTCTCGATGGGAGGTGGTGGTGAGGAGAAATCGCACCACCGTGCTGAGATTTTCACCGAAGAGATGTTGATATGGTTTTCTTCTTTCCATATAGCTGGTATGTAG 393 0.4377 MNNLNNLVSIVFNLIGLTQGPHNVSLCYFLSSESAAASSSNELIMENNGEAAWCCVCLSRLKDEDEIRVLPCLHKFHKICVNRWLKGRHKTCPLCRFSMGGGGEEKSHHRAEIFTEEMLIWFSSFHIAGM 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90765g00009 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 32 101 IPR013083 -
Stsc90765g00009 130 CDD RING-H2_PA-TM-RING 54 96 - -
Stsc90765g00009 130 PANTHER TARGET OF ERK KINASE MPK-1 40 101 - -
Stsc90765g00009 130 SUPERFAMILY RING/U-box 48 99 - -
Stsc90765g00009 130 SMART ring_2 54 95 IPR001841 -
Stsc90765g00009 130 Pfam Ring finger domain 54 96 IPR001841 -
Stsc90765g00009 130 ProSiteProfiles Zinc finger RING-type profile. 54 96 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90765g00009 Stsc-Chr90765 31187 31985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90765g00009 48 100 C3H Transcription Factor Family AT1G80400 50.943 3.15e-14 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90765g00009 - - gmx:100527665 170.629