Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90764g00006 ATGTATGGCTTCACTAACTTTGGCTGTGCATGTACCCTTGATAAGATTGCTTTGGTTGCTTTGAATGACAAGCTTACCAATGGTGACCCTCATGCTCTCACATCATGGAATCAGTCTCTTCATTTTTGTCAATGGGAGGGTGTTACATGCAGTCGCCGCCGAAGGAGAGTCTCAGCCTTGCAACTTCAAAATCAATACTGGGGTGGTACTCTTTCCCCATCCTTGGGAAATCTAACATTCCTCAAGGAGATCAATCTTACCAACATCAACTTACATGGTGAGATTCCAAGAGAAGTTGGTCATTTAAAGAGATTGCAGATTCTTGACTTGAGGCAGAATAATCTTCATGGTCAAATCCCTATTGAGATGATAAATTGTTCAAGACTTGATCTTGTTGGTAGTATTCCGCCTTCTTTGGGCACTCTTTCATCGTCCCTCGAGATGTTGTCACTTGCATACAACCATTTGGAAGGAACCATAACTCCAGCTTTGAGTAGGTTGTCGAATTTGAAACTCTTGTATTTCGGTGAAAACAATTTGTTTGGCCAAGTCCCTCCTTCATTTTATAACCTTTCAAATATTCAATTTCTTTCGCTCTCGGGAAATAATTTGTCTGGCCAAGTCCCTCCAATGGCTTTTCCCAACCTTCAGATACTTGCGTGTGGAATGAACCAATTCAATGGTACTTTCCCATCTTCAATATCCAACCTTTCCGAATTAATATATTTTGATTTAGGAGGAAATGATTTTCATGGACCAATTTCGCCTACTATAGGAAGTTTACAAAAACTTAAACTTTTTAACGTCGCTTATAACAGATTCGGAAGTGGAAGGAATGACGATTTGAATTTCCTTTCCTCGTTACAGAATTGTACTCATCTGCAAATACTTGACATTGGTAACAATTATTTAGGAGGTGTATTGACAGATCTCATAGCGAACTTATCAAGCAATTTCTTTTGGCTTACTATGGGGTCCAATCAAATATCTGGAAGTATACCTGATCGAATTGGAAAACTAATCAACCTAGAAGCACTTGGCGTGGAGGACAATTTCCTTGAGGGAACAATTCCATATTCAGTTGGAAAGCTAAAGAATCTGGTAGAGTTGACGTTGTGGGGAAACAAGTTGTTTGGCAACATTCCTCTTGTAATTGGTAACCTTACTATGTTGTCTTTAGTTAATCTGAGCTTTAATAAATTTGAAGGATTCATTCCTTTTACACTTGCAAATTGCACCAAGATGGAGAGATTTTTTGCTGAACATAACAACTTTAGTGGTAATATACCCATTCAAACATTCGGCTACCAACAAAGTTTAATAGAGTTGTCCCTATACTCAAACTCCTTTACTGGTCCCATTCCTTCTGATCTTGGTAAATTGAACCGTCTTTCCATCTTGCATTTACAAGAAAACAAATTGATTGGTGAGATTCCCATGGAACTTAGTGCTTGTTCTGCTCTAACAGAGCTCATACTAGAAAGAAACTCGTTTCATGGAAATATACCTTCATTCTTGGGATCTCTACTATCCCTTGAAATATTAGACCTTTCTAGTAACAACTTGTCAAGCACAATTCCGCATGAACTTGTGAATCTTACTCAGTTGAGTTCTTTGAACTTATCATTCAACCATCTCTCTGGTGAAGTCCCGGTAGGAGGGGTATTTAATAACATCACAGCAATATCACTCACCGGAAACAAACATCTTTGCGGTGGAGTTCCTCAATTGAATCTTCCTCCATGCCCTGCAGTGCCTTTACAGAAGAAACACAAGAGATCTATTAAGAAGAGAGTCATCCTCAGCATTGCATTCGGAGGGGTTTCCTATGGAGAACTACATCAAGCAACCAATGGATTTTCTTCATCCAATTTAATTGGCACGGAAAACTTTGGTACTGCGTATAGAGGAACCCTTGTTCATTTTGAGAAACCTGTAGCTGTGAAGGTGTTGAATCTTCAAACACGTGGGGTATCAAAGAGTTTTGTAGCCGAATGCAAAGCTCTAGTAAAAATCAAATACAGAAACCTTGTCAACATACTGACTTGTTGTTCTAGTGTTGATTATAAAGGGAATGATTTCAAGGCCATAGTGTTCGAGTTCATGTCTAATGGGAGTCTAGAAACTTTGTTGCACACCGATACTGAAGATAGAGAGTTCACAAATTTGAGTCTCAACCTTATACAAAGGGTAAACATTGCTCTTTATGTGGCTTTCACATTGGATTATCTTCACAATGATTCATCGGAAGCTGTAGCTCATTGTGATATTAAGCCAAGCAATGTTCTACTTGATGATGACATGGTTGCCCACTTGGGAGATTTTGGATTAGCTAGACTCGTTCCTGATGCGGTAAGCTATTCTAGCAGTAATCAAGCAAGCTCCTCAGCAATTAAGGGAACCATTGAATATATTCCACCAGAATATGGAGGAGGTGGGTCAGTGTCAAGAGAAGGAGACATGTATAGCTATGGAATTCTTCTTTTGGAGATGCTCACCGGAAAGAGGGCAACTGATAGCATGTTTGGTGAAGGTCTAAACCTTCGCAGTTTCTGTAACATGGCAACGGCAGAAGGAATCATTGAGATTGTTGATTCAAGATTGCTTATTCCAATTGATGAACAAGATGAAAGAAGAAGGGTCTTCACAAGGCAGCAAAATATGGAAGTCACCATTGGAGAGTGTCTTGTGTCATTTGCTAGGATTGGAATTGCATGTTCCGCAGAATCTCCCTCTCAAAAGAATGGGCATAAAAGATGTGATAATGGAGTTACATGCAATTAA 2784 0.3933 MYGFTNFGCACTLDKIALVALNDKLTNGDPHALTSWNQSLHFCQWEGVTCSRRRRRVSALQLQNQYWGGTLSPSLGNLTFLKEINLTNINLHGEIPREVGHLKRLQILDLRQNNLHGQIPIEMINCSRLDLVGSIPPSLGTLSSSLEMLSLAYNHLEGTITPALSRLSNLKLLYFGENNLFGQVPPSFYNLSNIQFLSLSGNNLSGQVPPMAFPNLQILACGMNQFNGTFPSSISNLSELIYFDLGGNDFHGPISPTIGSLQKLKLFNVAYNRFGSGRNDDLNFLSSLQNCTHLQILDIGNNYLGGVLTDLIANLSSNFFWLTMGSNQISGSIPDRIGKLINLEALGVEDNFLEGTIPYSVGKLKNLVELTLWGNKLFGNIPLVIGNLTMLSLVNLSFNKFEGFIPFTLANCTKMERFFAEHNNFSGNIPIQTFGYQQSLIELSLYSNSFTGPIPSDLGKLNRLSILHLQENKLIGEIPMELSACSALTELILERNSFHGNIPSFLGSLLSLEILDLSSNNLSSTIPHELVNLTQLSSLNLSFNHLSGEVPVGGVFNNITAISLTGNKHLCGGVPQLNLPPCPAVPLQKKHKRSIKKRVILSIAFGGVSYGELHQATNGFSSSNLIGTENFGTAYRGTLVHFEKPVAVKVLNLQTRGVSKSFVAECKALVKIKYRNLVNILTCCSSVDYKGNDFKAIVFEFMSNGSLETLLHTDTEDREFTNLSLNLIQRVNIALYVAFTLDYLHNDSSEAVAHCDIKPSNVLLDDDMVAHLGDFGLARLVPDAVSYSSSNQASSSAIKGTIEYIPPEYGGGGSVSREGDMYSYGILLLEMLTGKRATDSMFGEGLNLRSFCNMATAEGIIEIVDSRLLIPIDEQDERRRVFTRQQNMEVTIGECLVSFARIGIACSAESPSQKNGHKRCDNGVTCN 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90764g00006 927 Gene3D Phosphorylase Kinase; domain 1 588 701 - -
Stsc90764g00006 927 SUPERFAMILY Protein kinase-like (PK-like) 600 843 IPR011009 -
Stsc90764g00006 927 SUPERFAMILY L domain-like 317 572 - -
Stsc90764g00006 927 SUPERFAMILY L domain-like 35 382 - -
Stsc90764g00006 927 FunFam Inactive leucine-rich repeat receptor-like protein kinase 289 582 - -
Stsc90764g00006 927 PRINTS Leucine-rich repeat signature 533 546 - -
Stsc90764g00006 927 PRINTS Leucine-rich repeat signature 512 525 - -
Stsc90764g00006 927 SMART serkin_6 620 900 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90764g00006 927 Pfam Protein kinase domain 622 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90764g00006 927 Gene3D Ribonuclease Inhibitor 14 127 IPR032675 -
Stsc90764g00006 927 ProSiteProfiles Protein kinase domain profile. 620 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90764g00006 927 Gene3D Ribonuclease Inhibitor 129 280 IPR032675 -
Stsc90764g00006 927 Pfam Leucine rich repeat N-terminal domain 14 51 IPR013210 -
Stsc90764g00006 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 752 764 IPR008271 GO:0004672|GO:0006468
Stsc90764g00006 927 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 702 921 - -
Stsc90764g00006 927 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 51 288 - -
Stsc90764g00006 927 Gene3D Transferase(Phosphotransferase) domain 1 702 919 - -
Stsc90764g00006 927 FunFam LRR receptor-like serine/threonine-protein kinase EFR 590 701 - -
Stsc90764g00006 927 Pfam Leucine rich repeat 145 204 IPR001611 GO:0005515
Stsc90764g00006 927 Pfam Leucine rich repeat 487 546 IPR001611 GO:0005515
Stsc90764g00006 927 ProSiteProfiles Leucine-rich repeat profile. 511 534 IPR001611 GO:0005515
Stsc90764g00006 927 Gene3D Ribonuclease Inhibitor 281 587 IPR032675 -
Stsc90764g00006 927 PANTHER RECEPTOR-LIKE PROTEIN 55 355 914 - -
Stsc90764g00006 927 SMART LRR_typ_2 533 558 IPR003591 -
Stsc90764g00006 927 SMART LRR_typ_2 509 532 IPR003591 -
Stsc90764g00006 927 SMART LRR_typ_2 461 485 IPR003591 -
Stsc90764g00006 927 SMART LRR_typ_2 102 126 IPR003591 -
Stsc90764g00006 927 SMART LRR_typ_2 167 190 IPR003591 -
Stsc90764g00006 927 SMART LRR_typ_2 364 388 IPR003591 -
Stsc90764g00006 927 SMART LRR_typ_2 191 215 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90764g00006 Stsc-Chr90764 27133 30582 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90764g00006 2 914 Receptor kinase-like Gene Family AT3G47570 41.498 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc90764g00006 Pkinase 6.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90764g00006 - - ahf:112766919 1263.83