Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90764g00001 ATGGTGCAACTTTCATTTTTGGAGCTTGCATTCAATAATCTAGTTGGTAATATCCCTCCAACTTTGGGGAATCTTTCATCACTTAATACATTGTCACTTGCAAACAATTTCTTGGAAGGTCCTATAATTCAGGCTTTAAGGAGGTTGACAAATTTGGTATTCATATCTTTGACTTACAATAATTTGTCTGGCCAAGTTCCTAGTTCGTTTTACAACCTTTCAAATCTTCAAGTTCTTGATATAAGTGACAACCAGTTAGAGGGTACTCTTTCTCCAAATTTACACCTTGCCTTTCCCAATCTTAGTTCATTTATTGTTGGATGGAACCACTTTACTGGCAACTTCCCATCTTCATTATCCAACCTCACAGAATTGATACAATTTGATATATCTTTCAATAGTTTTAGAGGACCAATTCCTCCTACCTGGGGACACTCAAACAATCTTCGCTACTTTGGTATTATTAACAATAGTTTGATTGGAACCGGAGGAGCTCAGGATTTTGATTTCCTTTCCTCTTTAACCAATTGTACTCAATTGTCATATTTGATTCTGCAAGGAAATAATCTGGGCGGTGTATTTCCTGATCTCATAGGCAACTTCTCCGGCAGTCTCTCTGTGATTGAGATTTCCAATAATCAAATATCTGGAAGGCTACCTGAAGCAATTGGAAACTTATTTGGCTTGCGTGACCTTCTTATGCATGAGAATTCCCTTGAGGGAACCATTCCTGATTCAATTGGAAAGCTTAAGAATCTAGGAAGATTATCATTCGCTAAGAACAATTTCTCAGGTAATATTCCTAATTCCATAGGAAATCTTTCTAAATTATCAGAAGTTTATATGGGCTTCAATGCATTTGGTGGAAGTATTCCATTTACCTTGAGATATTGTACAAGTATGCAGTTATTCAATGTTCGAGAAAACAATTTGAGTGGTAACATCCCTACTCAAACCTTTGGTTATCAACAAGGTTTAGTATATCTTGACTTGTCCACCAACTCTTTTACTAGTCCCATTCCTTCAGATTTTGGTAGCTTGAAGCATCTTTCCACAGTATTTCTATATGAAAACAAGTTATCTGGTGTCATTCCCATGGAACTTTTTTCTTGTTCTGCATTAACAGAGCTTTATCTATATACAAACTCTTTCCATGGAAGTATACCTTCATTGTTTGGCTCTCTAAAATCCCTTGAAATCTTAGACCTTTCTAGCAACTTCTTCTCAGGAACAATCCCACATGAACTTGAGAACCTGACACTGTTGAATGGTTTGAACCTTTCTGATAACCAACTCTATGGCCAGTTCACTAAGAAGCCCAAGAAGTTATCTTCTTCCCCATCTTTACAACATAGATACTTGAGGGTTTCTTATGGAGAGCTACATCAAGCTACAAATGGATTTTCTTTATCCAATTTAGTTGGCACTGGAAGCTCTGGCTCTGTATATAGAGGAACCCTTGTCCATTTTGAGAGACCTGTTGCTGTGAAGGTGTTGAATCTTCAAACACGTGGGGCATCGAAGAGTTTCATGTCCGAATGCAAAGCTCTAGGAAAGATCAAGCACAGAAACCTTGTCAACATATTGACCTGTTGTTCAAGTGTTGATTACAAAGGTGATGATTTCAAGGCCATAGTGTTTGAGTTCATGCCTAATGGGAGTCTAGAAACTTTGTTGCACAATAATGAAGAGATCGAATCCAGAAATCTAAGTCTCGACCTTATGCAAAGGACAAATATTGCTCTTGATGTAGCTTTTGCATTGGATTATCTTCACAATGAATCCGAGGAAGCTGTAGTTCACTGTGATGTTAAGCCAACCACAAGCTATAACAGTGGTAATCAGGCTAGTTCCTCTGTAATTAAGGGAACCATCGGATATCTTCCACCAGAGTATGGTGAAGGTGGGTCAGTATCACCACAAGGAGACATCTATAGCTATGGAATTCTTCTTTTGGAAATACTAACCGGAAAGAGACCAACGGATGCCATGTTTGGTGAAGGTCTAAGCTTAACCAAGTTTTGTAAAATGGCAATTACGGAAGGAACCACTGAGATTGTTGATGCAAGATTGTTGCTGACTCCGTTTGATGAAGGAGAAAGAAGGATCACACAACAGCAAAACATTGAGGAGTGTTTAGTGTCTTTTGCTAGGATTGGAGTTGCATGTTCTCAAGAGTATCCCACTCAAAGGATGAGCATTAAGGATGCCATAATGGAGCTTCATGCAATTAGACAGAAACTGCTTAGATAG 2253 0.3835 MVQLSFLELAFNNLVGNIPPTLGNLSSLNTLSLANNFLEGPIIQALRRLTNLVFISLTYNNLSGQVPSSFYNLSNLQVLDISDNQLEGTLSPNLHLAFPNLSSFIVGWNHFTGNFPSSLSNLTELIQFDISFNSFRGPIPPTWGHSNNLRYFGIINNSLIGTGGAQDFDFLSSLTNCTQLSYLILQGNNLGGVFPDLIGNFSGSLSVIEISNNQISGRLPEAIGNLFGLRDLLMHENSLEGTIPDSIGKLKNLGRLSFAKNNFSGNIPNSIGNLSKLSEVYMGFNAFGGSIPFTLRYCTSMQLFNVRENNLSGNIPTQTFGYQQGLVYLDLSTNSFTSPIPSDFGSLKHLSTVFLYENKLSGVIPMELFSCSALTELYLYTNSFHGSIPSLFGSLKSLEILDLSSNFFSGTIPHELENLTLLNGLNLSDNQLYGQFTKKPKKLSSSPSLQHRYLRVSYGELHQATNGFSLSNLVGTGSSGSVYRGTLVHFERPVAVKVLNLQTRGASKSFMSECKALGKIKHRNLVNILTCCSSVDYKGDDFKAIVFEFMPNGSLETLLHNNEEIESRNLSLDLMQRTNIALDVAFALDYLHNESEEAVVHCDVKPTTSYNSGNQASSSVIKGTIGYLPPEYGEGGSVSPQGDIYSYGILLLEILTGKRPTDAMFGEGLSLTKFCKMAITEGTTEIVDARLLLTPFDEGERRITQQQNIEECLVSFARIGVACSQEYPTQRMSIKDAIMELHAIRQKLLR 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90764g00001 750 Gene3D Ribonuclease Inhibitor 323 452 IPR032675 -
Stsc90764g00001 750 ProSiteProfiles Protein kinase domain profile. 468 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90764g00001 750 SUPERFAMILY Protein kinase-like (PK-like) 441 741 IPR011009 -
Stsc90764g00001 750 FunFam Leucine-rich repeat receptor protein kinase EMS1 1 93 - -
Stsc90764g00001 750 Gene3D Phosphorylase Kinase; domain 1 453 549 - -
Stsc90764g00001 750 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 607 750 - -
Stsc90764g00001 750 ProSitePatterns Protein kinases ATP-binding region signature. 474 497 IPR017441 GO:0005524
Stsc90764g00001 750 FunFam LRR receptor-like serine/threonine-protein kinase EFR 439 549 - -
Stsc90764g00001 750 Pfam Leucine rich repeat 373 432 IPR001611 GO:0005515
Stsc90764g00001 750 Gene3D Transferase(Phosphotransferase) domain 1 550 749 - -
Stsc90764g00001 750 FunFam LRR receptor-like serine/threonine-protein kinase EFR 166 445 - -
Stsc90764g00001 750 Pfam Protein kinase domain 470 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90764g00001 750 Gene3D Ribonuclease Inhibitor 1 168 IPR032675 -
Stsc90764g00001 750 Gene3D Ribonuclease Inhibitor 169 322 IPR032675 -
Stsc90764g00001 750 SUPERFAMILY L domain-like 203 454 - -
Stsc90764g00001 750 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 173 742 - -
Stsc90764g00001 750 SUPERFAMILY L domain-like 3 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90764g00001 Stsc-Chr90764 4119 6958 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90764g00001 1 750 Receptor kinase-like Gene Family AT3G47570 37.984 1.21e-172 521
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc90764g00001 Pkinase 3.4e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90764g00001 - - ahf:112766492 808.52