Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90761g00018 ATGAGGGGGGGTAAGAGGAGGATGAGGAAGATCCGTTTCAGCAAGATCTATTCCTTTGCATTATGTGGTAAAGGAACCTTAGACTTGGAGACACAGATTGGGGGGCTGGGTTTTTCCAGGCTAGTGTTGTGCAATGAGGAAGAAGGGGTTATGCAAAATTATTCTGATAATTCTGTAAGCTCCACAAAATATACTGCTGCCACTTTCTTGCCAAAGTCACTGTTTGAGCAGTTTAGGAGGGTTGCTAATTTCTATTTCTTGGTCATTGGTATCCTGGCAATGACAAAGCTTGCTCCTTACACTGCTGTCAGCGCAATCGTTCCTCTCTGTGTCATCGTTGGGGCCACCATGCTCAAAGAGGGTATTGAAGATTGGCGTCGCAAGAAACAGGATATTGAGGTCAACAATAGAAAAGTCAGAGTGCATAAAGGTGATGGTGTTTTTGAATATACCGAGTGGAAGAATCTGAAGGTGGGGAATATAGTTAAGGTAGAGAAGGATCAATTCTTCCCTGCAGACCTGCTATTGCTTTCATCCAGCTATGAGGATGCAGTGTGCTATGTTGAGACCATGAACTTGGATGGAGAGACAAATTTGAAGTTAAAACAAGGATTGGATGTAACTTCTTCCTTACAGGACGACTACAAGTTCCGTGATTTCAAGGCTGTAGTTAAATGTGAAGACCCAAATGCAAATTTATACTCATTTATTGGGAGCATGGAGTTTGAAGAGCAAAAGTATCCCCTTTCTCCTCAGCAACTTCTTCTGAGAGACTCCAAACTTCGTAATACAGACTATGTATTTGGAGTGGTCATCTTCACTGGTCATGACACCAAGGTCATTCAAAACTCTACTGATCCCCCTTCGAAAAGAAGCAAAATTGAGAGAAAGATGGACAGAATTATTTACTTCTTGTTTTGTCTCTTGTTTCTAATTGCATTTGTTGGATCTATCCTCTTTGGCATTGCAACTAAGGATGACTTGGAGAATGGCGTGATGAAAAGATGGTATCTGAGGCCAGATGATTCCACGATATTCTTTGATCCAAAAAGAGTTGCTTCAGCTGCTGTATTTCATTTTTTGACTGCTTTAATGTTATATGGCTTCTTCATTCCTATCTCCTTGTATTTTTCAATTGAATTGGTGAAAGTCCTTCAAAGCATATTCATCAATCAAGATGTCCATATGTACTATGAAGAAGCAGACAAGCCAGCCTACGCCCGCACTTCAAACTTGAATGAGGAACTAGGCCAAGTTGATACAATACTTTCTGATAAAACTGGAACTCTGACCTGCAACTCAATGGAGTTCATCAAATGTTCTGTTGCTGGGGTAGCTTATGGCCGAGGTGTTACAGAGGTTGAGCAGGCCTTGGATAAAAAAACCAGTTCTCCTTTGATTCATGAACATGTTTATGGGACAGAATCAGAATCAGATGAAAACAGGAAGTCTTCTGATGGAAAAGCACGCATCAAAGGTTTTAACTTTACAGATGAAAGGATAATGAATGGGAACTGGGTTAATGAGCCTCATGCAGATGTTATACAGAAATTTTTTCGTGTATTGGCAATATGTCATACTGCCATTCCGGAAGTGGATGAAGATACAGGAAATGTCTCATATGAGGCTGAATCTCCAGATGAAGCTGCGTTTGTGATTTCTGCTAAAGAAATTGGTTTCGAATTCTTTAAAAGGACTCAGACTAGTTTATCAGTTAATGAATGGGATCCAGTTTCTGGTAAAAAGGTTGAAAGAATGTACCAGCTTCTTAATGTTTTAGAATTCAATAGCTCAAGGAAGCGAATGTCGGTAATAGTAAAAGATGAAGAAGGGAGAATTTTGCTACTTTGTAAAGGTGCTGACAGTGTCATGTTTGAAAGGCTTGCCTTGAATGGGAGAGAGTTTCAAGATAAAACCTTGGAGCATGTCCAGCAATATGCTGATGCAGGTCTAAGGACCCTGATACTGGCCTATCGTGAACTTGATGAGAATGAATACAAGGAGTTCAACAATGCATTTTACGAAGCAAAAAATTCAGTTACTGCAGATCGGGAGACGCTGATTGAGGAATTATCAAATAAAGTTGAGAGGAATCTAATCCTTCTAGGTACCACTGCTGTAGAGGACAAGCTACAAAATGGGGTTCCTGATTGCATTGAAAGGCTTGCTTGTGCTGGAATTAAGATTTGGGTGTTAACTGGGGACAAAATGGAGACCGCCATTAATATTGGTTTTTCTTGTAGTTTGCTTAGACAAGGGATGAGACAGATTATAATTCATTTGGATACTCCAGAAATTCAAGCATTGGAGAAGGAAGGTGACAAGATGGCTATTTCCAAGGCATCAAGGGAAAGTGTCTGCCATCAGATATCAGAAGCTGCTCTCCGGCTTAATGCATCCAGAGGAACCTCCCAGCAGGCATTTGCTCTGATTATTGATGGAAAGTCACTTGTATATGCTCTGGAGGATAATATGAAGAACATGTTTTTGGATCTCGCAATTCATTGTGCATCTGTTATCTGCTGTCGCTCGTCACCAAAGCAAAAGGCACTGGTTACTAAATTAGTCAAATCTGGAACTGGTAAAACAACTTTAGCTATTGGTGACGGAGCTAATGATGTGGGAATGCTTCAAGAAGCAGATATAGGGATTGGAATCAGTGGTTTTGAAGGGATGCAGGCTGTGATGTCCAGCGATATTGCAATCGCACAATTCCGGTATTTGGAAAGATTACTTCTTGTACATGGTCATTGGTGTTACCGGAGGATGTCATCAATGATTTGTTACTTTTTCTACAAGAACATCACATTTGGCTTCACTTTATTCTTGTATGAGGTGTATGCATCATTCTCTGGAGAGCCTGCATACAATGACTGGTTCTTGTCTCTCTATAGTATACTCTTTTCGTCGCTTCCCGTGATTGCCCTTGGGGTCCTTGACCAGGATGTATCTGCGAGGTATTGTCTAAAGTTTCCTAAGTTATACCAACAAGGAGTTCAAAACGTCCTCTTCCGCTGGCGCCGGATCCTCAGCTGGATGCTTAACGGATTCATCAGTGCAACAATGGTTTTCTTCTTCTGCATAAAAGCGATGGAGATTCAGGCCTTCAATGAAGAGGGAAGAACCACAGGGCGTGATATATTGGGAGCAACCATGTACACTTGTGTGGTTTGGATTGTGAACTTGCAGATGGCACTTACTATAAGATACTTCACATTGATTCAACACATTTTCATCTCGGGTTCCATTGCTCTGTGGTATCTGTTTCTCGTTGTGTACGGCGCAATGCCTTCGAAGATTTCAGGAAATGCTTACAAAGTCTTCATTGAGACGCTGGCTCCTTCACCTTCCTATTGGAAAGGTGTTACACCTACCACTGTTGATTGTTCAGCATTTTGA 3399 0.4119 MRGGKRRMRKIRFSKIYSFALCGKGTLDLETQIGGLGFSRLVLCNEEEGVMQNYSDNSVSSTKYTAATFLPKSLFEQFRRVANFYFLVIGILAMTKLAPYTAVSAIVPLCVIVGATMLKEGIEDWRRKKQDIEVNNRKVRVHKGDGVFEYTEWKNLKVGNIVKVEKDQFFPADLLLLSSSYEDAVCYVETMNLDGETNLKLKQGLDVTSSLQDDYKFRDFKAVVKCEDPNANLYSFIGSMEFEEQKYPLSPQQLLLRDSKLRNTDYVFGVVIFTGHDTKVIQNSTDPPSKRSKIERKMDRIIYFLFCLLFLIAFVGSILFGIATKDDLENGVMKRWYLRPDDSTIFFDPKRVASAAVFHFLTALMLYGFFIPISLYFSIELVKVLQSIFINQDVHMYYEEADKPAYARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVAGVAYGRGVTEVEQALDKKTSSPLIHEHVYGTESESDENRKSSDGKARIKGFNFTDERIMNGNWVNEPHADVIQKFFRVLAICHTAIPEVDEDTGNVSYEAESPDEAAFVISAKEIGFEFFKRTQTSLSVNEWDPVSGKKVERMYQLLNVLEFNSSRKRMSVIVKDEEGRILLLCKGADSVMFERLALNGREFQDKTLEHVQQYADAGLRTLILAYRELDENEYKEFNNAFYEAKNSVTADRETLIEELSNKVERNLILLGTTAVEDKLQNGVPDCIERLACAGIKIWVLTGDKMETAINIGFSCSLLRQGMRQIIIHLDTPEIQALEKEGDKMAISKASRESVCHQISEAALRLNASRGTSQQAFALIIDGKSLVYALEDNMKNMFLDLAIHCASVICCRSSPKQKALVTKLVKSGTGKTTLAIGDGANDVGMLQEADIGIGISGFEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRMSSMICYFFYKNITFGFTLFLYEVYASFSGEPAYNDWFLSLYSILFSSLPVIALGVLDQDVSARYCLKFPKLYQQGVQNVLFRWRRILSWMLNGFISATMVFFFCIKAMEIQAFNEEGRTTGRDILGATMYTCVVWIVNLQMALTIRYFTLIQHIFISGSIALWYLFLVVYGAMPSKISGNAYKVFIETLAPSPSYWKGVTPTTVDCSAF 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90761g00018 1132 FunFam Phospholipid-transporting ATPase 115 285 - -
Stsc90761g00018 1132 Pfam Phospholipid-translocating ATPase N-terminal 45 105 IPR032631 -
Stsc90761g00018 1132 Pfam Phospholipid-translocating P-type ATPase C-terminal 895 1127 IPR032630 -
Stsc90761g00018 1132 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 1123 IPR023298 -
Stsc90761g00018 1132 Gene3D - 702 907 IPR023214 -
Stsc90761g00018 1132 PRINTS P-type cation-transporting ATPase superfamily signature 423 437 - -
Stsc90761g00018 1132 PRINTS P-type cation-transporting ATPase superfamily signature 867 886 - -
Stsc90761g00018 1132 NCBIfam phospholipid-translocating P-type ATPase 54 1126 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Stsc90761g00018 1132 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 45 1122 - -
Stsc90761g00018 1132 NCBIfam HAD-IC family P-type ATPase 838 949 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc90761g00018 1132 FunFam Phospholipid-transporting ATPase 544 702 - -
Stsc90761g00018 1132 SFLD p-type atpase 405 918 IPR044492 -
Stsc90761g00018 1132 CDD P-type_ATPase_APLT_Dnf-like 56 1027 - -
Stsc90761g00018 1132 Gene3D - 567 701 IPR023299 GO:0000166
Stsc90761g00018 1132 SUPERFAMILY HAD-like 418 922 IPR036412 -
Stsc90761g00018 1132 Pfam Cation transport ATPase (P-type) 536 627 - -
Stsc90761g00018 1132 FunFam Phospholipid-transporting ATPase 702 907 - -
Stsc90761g00018 1132 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 494 703 IPR023299 GO:0000166
Stsc90761g00018 1132 SUPERFAMILY Calcium ATPase, transduction domain A 137 282 IPR008250 -
Stsc90761g00018 1132 ProSitePatterns E1-E2 ATPases phosphorylation site. 425 431 IPR018303 -
Stsc90761g00018 1132 SFLD Haloacid Dehalogenase 405 918 - -
Stsc90761g00018 1132 Gene3D - 115 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90761g00018 Stsc-Chr90761 66892 72774 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90761g00018 3 1119 Primary Pumps ATPases AT1G68710 71.490 0.0 1728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90761g00018 K01530 - gmx:100798329 1867.82