Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90761g00009 ATGGGAAGGACTCCTTGCTGCAGCCATGAGCATCTCAGGAAGGGTGCTTGGACCTTTCAAGAAGATCAGAAGCTCAAAGCTTACATTCACACCTATGGACCTGGAAGCTGGCGCACCTTGCCAAATAAAGCTGGTCTTGAAAGATGTGGAAAGAGTTGCAGGCTGAGATGGTTTAACTACCTCAGGCCTGGCATTAAGAGAGGCCGGTTAACCAAAGAGGAAGAGCACACCATCATAACACTCCACGCACTTGTTGGCAACAGGTGGTCCAGTATTGCCAAGCACTTGCCAAAGCGAACAGACAACGAAATCAAGAACTTCTGGAACTCTTATCTCAAGAAGAAGAACAACAACAACTACTACTTATTAGATCCATTATTGACTAATAATCCCCAACCAGCAGCAACAATAACCACTCCTACTAGTTTCTCATCATCAGCTTCACAACTTACTCATCAATCTACATCAAACCTACTCAACCAAGTGGCAACAAACATCGCGGCAGCTACCAGAACATCATTCCAACTCGTTACTCGTTACTCGCAGCAGCAGCAGCAGCCTCAGCCTCATGTGCCCTCCACTTCATCAGCAAGGTTACTCAACAAAATGGCCAATTCCTTCTATGGCAATGAAGCTGCAAAAGCAGCGTTTTCGAGGTTAATGAATAATGGAATTGATGATGAGCAAGTTGGAGGGTATGGTTTAGGTGGTGTTCCAACAGGAGGAGTAGTGATCACACCTTCATCCTTTTCAGATAATAATAATAATAGTAGTTGGCAATGCGCTTCATCATCTGAATTCAACTATTGCACTACCGACTCCTCTAATTCTACATCTACATTCAGCTTTCTAGATCACAACAATGCAGCATCAGCTCATGATGATGAATTTATTCAGATTTTAAGGTATGATCAGGATGACATAATAAGCATTTACATGCAGGATTTGTAA 951 0.4311 MGRTPCCSHEHLRKGAWTFQEDQKLKAYIHTYGPGSWRTLPNKAGLERCGKSCRLRWFNYLRPGIKRGRLTKEEEHTIITLHALVGNRWSSIAKHLPKRTDNEIKNFWNSYLKKKNNNNYYLLDPLLTNNPQPAATITTPTSFSSSASQLTHQSTSNLLNQVATNIAAATRTSFQLVTRYSQQQQQPQPHVPSTSSARLLNKMANSFYGNEAAKAAFSRLMNNGIDDEQVGGYGLGGVPTGGVVITPSSFSDNNNNSSWQCASSSEFNYCTTDSSNSTSTFSFLDHNNAASAHDDEFIQILRYDQDDIISIYMQDL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90761g00009 316 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc90761g00009 316 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc90761g00009 316 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc90761g00009 316 CDD SANT 16 61 IPR001005 -
Stsc90761g00009 316 SMART sant 13 63 IPR001005 -
Stsc90761g00009 316 SMART sant 66 114 IPR001005 -
Stsc90761g00009 316 Gene3D - 14 66 - -
Stsc90761g00009 316 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc90761g00009 316 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 272 - -
Stsc90761g00009 316 CDD SANT 71 112 IPR001005 -
Stsc90761g00009 316 Gene3D - 70 115 - -
Stsc90761g00009 316 FunFam MYB-related transcription factor 13 66 - -
Stsc90761g00009 316 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Stsc90761g00009 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc90761g00009 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90761g00009 Stsc-Chr90761 34491 35564 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90761g00009 1 154 MYB Transcription Factor Family AT3G01140 59.091 1.98e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc90761g00009 Myb_DNA-binding 2.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90761g00009 K09422 - gmx:100775267 238.039