Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90761g00008 ATGGGTGAAAAAGAGTGGTACTTCTTCTGTGTAAGGGACAGAAAATACCCAACAGGATTGAGGACAAATAGAGCAACAGAAGCTGGGTATTGGAAGGCTACAGGGAAAGACAAGGAGATACACAGAGGCAAATCACTTGTTGGGATGAAGAAGACACTTGTCTTCTACAAAGGTAGAGCTCCCAAAGGACACAAATCTGATTGGGTCATGCATGAGTTCAGGCTTGATGGTCAATTCAATCCACACAACCTCCCCAAATCTGCAAAGAACGAGTGGGTGATTTGCAGGGTTTTTCACAAGAGTTCATCCGGTAAGAAAATCCATATTTCTGGGATAATGAGGTTGGACTCTTATGGCAACCAACAACCAACACCATTGCCAGATTGCTCACCTTGCAACACTTACGTGCCCTGCTTCTCCAATCCAATTATTGATCCTTTTGCTCTTGCTGTTAATGCTCCTTCCAATTCATGGACGGCCATGCAACCAGTTCAAGAAGCACCAAATTCCACATATTCCTGTTCTCATCATCAGAGTCAGGAGCATTCAATCCTTAGAGCCTTGCTTGAAAACAATTCTGGTTTCAAAGCTGCAGAGAGGGAAATGCCACTTACTGCCTCTCTTGAAACTGAAACATCCCCGCACGACCTTGCTACCCTCTGGAATTACCAGGTCCAGATCAAGTAG 687 0.4469 MGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIHRGKSLVGMKKTLVFYKGRAPKGHKSDWVMHEFRLDGQFNPHNLPKSAKNEWVICRVFHKSSSGKKIHISGIMRLDSYGNQQPTPLPDCSPCNTYVPCFSNPIIDPFALAVNAPSNSWTAMQPVQEAPNSTYSCSHHQSQEHSILRALLENNSGFKAAEREMPLTASLETETSPHDLATLWNYQVQIK 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90761g00008 228 SUPERFAMILY NAC domain 2 100 IPR036093 GO:0003677|GO:0006355
Stsc90761g00008 228 Pfam No apical meristem (NAM) protein 2 75 IPR003441 GO:0003677|GO:0006355
Stsc90761g00008 228 Gene3D NAC domain 1 106 IPR036093 GO:0003677|GO:0006355
Stsc90761g00008 228 ProSiteProfiles NAC domain profile. 1 100 IPR003441 GO:0003677|GO:0006355
Stsc90761g00008 228 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90761g00008 Stsc-Chr90761 27980 29493 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90761g00008 1 223 NAC Transcription Factor Family AT5G61430 51.481 9.49e-83 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc90761g00008 NAM 9.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90761g00008 - - ahf:112708225 306.219