Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90761g00002 ATGGTTGACAATAAGGACCCTGCAATTACTCTCTTTGGCAAGAAGATTCCCTTTCCCGGTGCGGGTGCCCAAGAACAAGAACATGACGCAGATGTCGTCACTGAATTAGAGGATGGAGAGGAGAAACACAAGGATGGTGGTCCAGCTGATGAAGTTAGTGAGAAAAAGAAAGAGGGTGATCCTCCTCCAAATGCAAGCAAGGATTCGGGTCCAAAAACACCATCGATAGAGGAAGAAAGTGGAAAGCAAAAGAAGGAAGAGAAGGCACTCAAGAAGCCGGATAAAGTGCTTCCATGTCAGCGCTGCAACAGCATGGACACCAAGTTCTGCTACTACAACAACTATAACGTCAACCAGCCACGCTACTTCTGCAAAGCCTGCCAAAGATACTGGACTGCAGGCGGCACCATGAGGAATGTCCCGGTTGGATCAGGCAGGAGAAAGAACAAGAACACCACCTCCTCGCACTATAGCCACATCACCATCTCTGAGGCTCTTCAAGCAGCTAATACCAATTCCAGAGTCCTAAGCTTTGGATTGGATACACCACCCAATCCCATATGTGATTCCATGGCTTCTGTCCTTGAGCCTTGCAAAAGTGGAGAAAATGGAGGCGATGACTGCTCCAGTGCATCTTCAATTACGGTCTCAAATTCCATGGAGGAAACAGTAGGCAAAACCGCATCTCAAGAAGAGCCTTTACCACAAACCAACGGATTCATTCCTCCCCAAGTGCCATGCATTCCTAATGTTGCTTGGCCTTATCCGCCGTGGAATTCTGCAGTGCCCTCCTCACCTGCTGCTTTGTGTCCTCCTGGATTTCCCATTTCATTCTACCCTGCGCCCTTTTGGAATTGGAATGTTCCGTGGTTCCCCTCACATCCATCTACTCCAAATCAAAACTCTTGGCATTCTCCAACCCTAGGGAAGCACTCCAGGGATGATGATGATCCTCCAAGGCATAGAAATGGGTGTGTTTTGGTTCCCAAAACTTTAAGAATTGATGATCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATCAAGAATGAACGTGTCAGTTTTAAGGCCTTCCAATCAAAGAAGGAAGAGAAGAACAAAGTTGTTGAAACCTCGCCAGTGTTGCTGGCTAACCCTGCAGCCTTGTGTAGATCCCTTAATTTTCATGAGAACTCGTGA 1188 0.4722 MVDNKDPAITLFGKKIPFPGAGAQEQEHDADVVTELEDGEEKHKDGGPADEVSEKKKEGDPPPNASKDSGPKTPSIEEESGKQKKEEKALKKPDKVLPCQRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGSGRRKNKNTTSSHYSHITISEALQAANTNSRVLSFGLDTPPNPICDSMASVLEPCKSGENGGDDCSSASSITVSNSMEETVGKTASQEEPLPQTNGFIPPQVPCIPNVAWPYPPWNSAVPSSPAALCPPGFPISFYPAPFWNWNVPWFPSHPSTPNQNSWHSPTLGKHSRDDDDPPRHRNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNERVSFKAFQSKKEEKNKVVETSPVLLANPAALCRSLNFHENS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90761g00002 395 Pfam Dof domain, zinc finger 94 151 IPR003851 GO:0003677|GO:0006355
Stsc90761g00002 395 PANTHER CYCLIC DOF FACTOR 2 4 395 IPR045174 GO:0003700|GO:0006355
Stsc90761g00002 395 ProSitePatterns Zinc finger Dof-type signature. 99 135 IPR003851 GO:0003677|GO:0006355
Stsc90761g00002 395 MobiDBLite consensus disorder prediction 1 92 - -
Stsc90761g00002 395 ProSiteProfiles Zinc finger Dof-type profile. 97 151 IPR003851 GO:0003677|GO:0006355
Stsc90761g00002 395 MobiDBLite consensus disorder prediction 308 323 - -
Stsc90761g00002 395 MobiDBLite consensus disorder prediction 72 92 - -
Stsc90761g00002 395 MobiDBLite consensus disorder prediction 35 63 - -
Stsc90761g00002 395 MobiDBLite consensus disorder prediction 296 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90761g00002 Stsc-Chr90761 7519 9424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90761g00002 1 393 C2C2-Dof Transcription Factor Family AT3G47500 45.870 9.68e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc90761g00002 zf-Dof 4.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90761g00002 - - aip:107629495 523.857