Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90758g00018 ATGCAAGACATATGCGAGCTTTTGGGGTCAGGACTTGGATGTAGTAATAATAATGAAGTCCGCATGGTAGGAATTTATGGAATGGGCGGAGTAGGTAAATCCACTCTTGCCAAAGCAGTTTTTAATTATATAGCTGACCATTTTGACAATCGATGCTTTCTTGAGAACGTGAGTGAAATATCAAGTAAGCATGGATTGGAACGTCAACAAGAGAAGCTTCTTTATGACATTGTTGGAGAATTGGATGCCAAATTAGGAGGCACCAGTGAAGGTATGGCACTAATAAAGCGTAGGCTTCAACAAAAGAAGGTTCTGTTGATTCTTGATGACATTGACCATAAAAAGCAGTTGCAAGCACTTGCTGGAGGGCTAGATTGGTTTGGTTCTGGTAGCAGAGTTATCATAACAACTCGAGACAAAAAATTACTAAAGAGCCATGGGATTGAAAGAACGTACGAGTTAAAGGTGTTAAATTGGGAAGATGCTAGTAAAATGTTTGAGTGGCAGGCTCTTAAAAATCGGAAAGTTGATCTGTATCTTATAAATTGTGCAGTAACTTATTGTGCAAACCTTCCATTGGCTTTGGAGGTAATAAGTTCTGATTTGGCTAGTTCAGAGGTAGAAGATTGGGAGTCTGCATTAAGCCATTATCAAAGAAGTCTTGACAAAGGAATCTTTGATGAACTTAAAAGAAGTTTTGATCCTTTGGAGAACTATGTGCAAAATGTCTTTCTTGACATTGCTTGTTGCTTTCAAGTGTTGAGTTTGACAGAGATCATTGGCATGTTACGTGCTCAACTTGGTTTCTGCCCAAAATATGCTATTCAAATGTTGGAAGAGAAATCTCTCATAACGATTGAAGAAAATCAGGTGAGATTGCATAACATAATACATGAAATGGGCCGAAAAATTGAACAGGGAGGACTGCATGGCTACCGCTATTGCTTACGGTCTTATGAAGATATAGAAAAAATGTTTAAGGCCAAGGAGATTCATGATAAAATTGAAATGATAATTCTAGATCTTATCCATCAAAATGTAAAAGAGTTCGAATGGAATGAAGCAGCCTTGAGAGATATGGGAAATCTCAAAACACTGTATTTACCATGTGGTTTTTGCCCAAAAAATCTCACCATGCTCAAGTTACCCAACAGTTGCTTACCACCACTCATGATTGTGCATACGGAGTTCAAGAATATGAGAGTTTTGAACTTTGATTATGCTGAATCTGTAAGAGCAATACCTGATCTATCATCTATCTCAGGTTTAGAGGAATTATCATTTGCAAAATGTAGAAATTTGGTTGCTCTTCATAATTCAGTTGGAAAACTGAGTAACCTTAAGATGTTAGACGCCTCTGGCTGCAGCAACCTTAGAAGCTTCCCACCTCTTAGGTTGCCATCTCTTGAAAAACTCAATCTCTCATCATGCTCCAGTCTTGAGAAATTTCCAGAAATACTTGGAAATATGAGAAGGTTAGCCGAGATCAATTTAAGTTCCACTGCCGTAAAAGTTATACCCACTGCTCTCTTTTATGATGCCCCCAATTTACAACAGTTATCATTTGCAAATTGCAAGAATTTGAAGGAACTTGATAGTTCAGTTGGAAGACTTAACCCTAAGATATTGGATGCCTCTTGCTGTAGCAAGCTTAGAAGCTTCCCGTCTCTTAGGTTGCCATCTCTTGAAAAATTATCTCAGCTCGATTTGAGTTCCACTGACATAATAGCCATTCCTGATCTCTCTTCTGCCCCCAATTTACAAGAGTTATCATTTTCAAATTGTGAGAGTTTATTTGCAATTGATAAGTCAGTTGGACTTTTGGGTAAACTTAGACTGCTAAACGCCTCTGGTTGCTGCAAGCTTGAAAGCTTCCCACCTCTTTCACTGCCATCTCTCGAAGAACTCGATCTCTCATGGTGTTCAAGTCTTCAGAAATTTCCAGAGACATTAGACAAGATGGAAAAAATAACAAGCCTCACTTTGCAGTACAGTTCCATAAAAGAATTGCCAAATTCAATTCAAAATCTTACTCGGCTTCAAACCTTGGAAATGCTTGAATGTGGAATGCTTCATTTACCGACCAACATTACATTGTTGCCAGAACTGAGACACATCTCGTTTTATCGAGCACCTAACGAGCATGAAGGTGAAGAAAAGTTGTGTTGGATGAAGTCTTCGAACAGCACAATTTATGCATCACAGTGTACTATAACCGATGGAATATTTTCGCAAGTATTTCCATGGTTTGCTATGTACCTGGAAGAATTAGACTTGTTCCGTGTTAATTTCACATTCCTTCCGTACTGCACCACAGAATGTGAACTTTTGAAGGAATTGAATTTGGATCAGTGTCATAATCTTCAAAAAATTAGATGGCTTCCTCCCAACTTGGAGAAACTCTCTGTGACATGTTGTACATCTTTCCAAGATTTAGACCTCACAATCCTTCCCAGAAGTACCAAAGAATATTACAATTTCAGGAGAGTCATTGTTGATAATTGTGAGAATCTTCGGATAATCAATGGAATTCCACCAGAAGGTTTATCTGCATCAAATTGCCCGAACCTGCCTGCCCCGTACATAAGCAACCTATTGAATCAGGATTTACGCGAGGATGGTGGAAACATGTGGCGTTTTGTGACAGGAAACAGGATTCAAGGTTGTTTCCATGCTTGTGGAAATGGAAATTCATTCCCTTTCTGGTTTCAGAATCAGTTTCCCGCTATTTCACTTTGTGTTTTCCTTGGAACATTAGGTAATAAACGCCAGATGCCATTCTATTTTTGCATCGAGTTGGAGATCAATCACAAAATCGTAAAGAAGTGGTTCCTAGAGGATAACAAGAAGCATTATTGGGTTGTGAAAAAACCATCAGAAGCTGATCATATATTCGTTCTCCATGAGAAGCACTTGAAATATGAAAATAGCGTGAATGAAGCGCTTCATACAGGATGGAATTATGCCGAGGTTTTTGTTCATATGTATTCTCTAATGGGAATGCCAAAAATTGACGTGAAGATTGGAATTCGTACATTGAAGGAAGATTCTCGGCGTATTAGTCTTGGAAATGCATTTCACAGATCCACATAG 3093 0.3857 MQDICELLGSGLGCSNNNEVRMVGIYGMGGVGKSTLAKAVFNYIADHFDNRCFLENVSEISSKHGLERQQEKLLYDIVGELDAKLGGTSEGMALIKRRLQQKKVLLILDDIDHKKQLQALAGGLDWFGSGSRVIITTRDKKLLKSHGIERTYELKVLNWEDASKMFEWQALKNRKVDLYLINCAVTYCANLPLALEVISSDLASSEVEDWESALSHYQRSLDKGIFDELKRSFDPLENYVQNVFLDIACCFQVLSLTEIIGMLRAQLGFCPKYAIQMLEEKSLITIEENQVRLHNIIHEMGRKIEQGGLHGYRYCLRSYEDIEKMFKAKEIHDKIEMIILDLIHQNVKEFEWNEAALRDMGNLKTLYLPCGFCPKNLTMLKLPNSCLPPLMIVHTEFKNMRVLNFDYAESVRAIPDLSSISGLEELSFAKCRNLVALHNSVGKLSNLKMLDASGCSNLRSFPPLRLPSLEKLNLSSCSSLEKFPEILGNMRRLAEINLSSTAVKVIPTALFYDAPNLQQLSFANCKNLKELDSSVGRLNPKILDASCCSKLRSFPSLRLPSLEKLSQLDLSSTDIIAIPDLSSAPNLQELSFSNCESLFAIDKSVGLLGKLRLLNASGCCKLESFPPLSLPSLEELDLSWCSSLQKFPETLDKMEKITSLTLQYSSIKELPNSIQNLTRLQTLEMLECGMLHLPTNITLLPELRHISFYRAPNEHEGEEKLCWMKSSNSTIYASQCTITDGIFSQVFPWFAMYLEELDLFRVNFTFLPYCTTECELLKELNLDQCHNLQKIRWLPPNLEKLSVTCCTSFQDLDLTILPRSTKEYYNFRRVIVDNCENLRIINGIPPEGLSASNCPNLPAPYISNLLNQDLREDGGNMWRFVTGNRIQGCFHACGNGNSFPFWFQNQFPAISLCVFLGTLGNKRQMPFYFCIELEINHKIVKKWFLEDNKKHYWVVKKPSEADHIFVLHEKHLKYENSVNEALHTGWNYAEVFVHMYSLMGMPKIDVKIGIRTLKEDSRRISLGNAFHRST 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90758g00018 1030 SMART AAA_5 19 157 IPR003593 GO:0016887
Stsc90758g00018 1030 SUPERFAMILY L domain-like 343 627 - -
Stsc90758g00018 1030 Gene3D Ribonuclease Inhibitor 321 539 IPR032675 -
Stsc90758g00018 1030 Gene3D Ribonuclease Inhibitor 647 868 IPR032675 -
Stsc90758g00018 1030 SUPERFAMILY "Winged helix" DNA-binding domain 225 307 IPR036390 -
Stsc90758g00018 1030 SUPERFAMILY L domain-like 542 835 - -
Stsc90758g00018 1030 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 247 IPR027417 -
Stsc90758g00018 1030 Gene3D - 1 149 IPR027417 -
Stsc90758g00018 1030 Gene3D Ribonuclease Inhibitor 541 646 IPR032675 -
Stsc90758g00018 1030 Pfam NB-ARC domain 17 221 IPR002182 GO:0043531
Stsc90758g00018 1030 PRINTS Disease resistance protein signature 188 202 - -
Stsc90758g00018 1030 PRINTS Disease resistance protein signature 22 37 - -
Stsc90758g00018 1030 PRINTS Disease resistance protein signature 98 112 - -
Stsc90758g00018 1030 PRINTS Disease resistance protein signature 628 644 - -
Stsc90758g00018 1030 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 548 650 IPR044974 GO:0006952
Stsc90758g00018 1030 Gene3D - 156 237 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90758g00018 Stsc-Chr90758 82555 88896 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90758g00018 19 625 WRKY Transcription Factor Family AT5G45050 29.235 4.34e-59 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90758g00018 - - ahf:112751548 1140.18