Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90758g00015 ATGGCAAATCAAGATTCTTGTTCCACTTCTTCCTCCAACCATGGTTGGACATATGATGTCTTTGTGAGCTTCCACGGCAAAGACACGCGTCGCAACTTCACCGGATACCTCACAGATGCCTTGGACAGAAAGGGAATCCACACTTTCAGGGATGACATAAAGCTGAAGAAAGGAGAAGGGATTCCATCTGCACTAGTCAAAGCAATTGAAGAGTCTAGAATTGCTGTGGTTGTTTTCTCCGAAAACTATGCATCCTCAAGTTGGTGTCTTGATGAGTTGGTTGAGATCATGAGGTGCATGAAAAAGAAGGGACAGTTGGTAATTCCAATTTTTTACTCTGTTGATGCTTCTGTGGTAAGGCATCAAAGGGAGAGTTTTGGAAAGTCAATGGAAAAACATGAAGCAAGACATGACAAAGAGACAGTAAATAAATGGAGGATTGCATTGAAAGAAGCAGCCAATTTATCAGGATGGAGTTTCAAATATGGGTATGAATATAAGTTTATTCAGCAGATTACTGAAGAAATATCAAACATGTTAAACATTACCTCCTTACACATTGCTGATCACCCTGTTGGATTAAACTATAGAGTGTCAAAAATGGTGAGACTCGTAGAACTAAAGTCTAATGATGATACCAAAATGGTTGGAATCTATGGCATTGGTGGAATTGGCAAAACAACCATTGCTAGAGCTGTGTACAACTCAATTTCTAGCAGGTTTGAAGGGTCAAGCTTTCTTGCTGATGTAAGAGAAAACACAATGAAACATGGTTTGGTCCAACTACAAGAGACTCTTCTCCATAATTTGCTTGGAGAAAACATCAAATTGGGTGATGTGAACAGAGGAATTCCCATAATAAAAAGAAGGCTTTGCACCAAGAAGGTTCTTTTGATTCTTGATGACGTCGACAACCTTCGACAGCTGAGGTCATTGGCTGGAAGCCATGACTGGTTTGGTTCCGGAAGTAGGATCATCATAACAACAAGAGACAAGCATTTGCTAACAACTCATGGGGTTGAAAATGAGAACATATATGAAGTGAAACAGTTGAATGATGATGAATCTCTAGAACTATTTAGTTTAAATGCTTTTAGGAGGAAGCAGCCTAAGGAAAACTATGTCAACATTGCGAATCGAATGGTGCAATATGCCAAAGGCCTTCCACTGGCTTTGAATGTGATTGGTTCTGATCTGTTTGGCAAAACAATTGAAGAATGGGAGAGTGCATTGAAGAAATATGAAAGAATTCCAAGCAGAGAAATCTTAGATGTGCTTAGAGTAAGCTATGATAATTTGGATGATAATGAGAAGGAAATTTTCCTTGACATTGCATGTTTCTTCAAAGGGAATACGAGGCGGGAAGTGGTAAACACACTAGATGCCTCACAGTTCTATCCAGAATATGGCATTGGTGTTCTTATTGACAAGTCTCTAGTAACTATCAGTGATGCTGACACAATTAAGATGCATGATCTTATACAAGACCTTGGTAGAGACATTGCTAGAAAGGACTCGCCATTCGACCCGGGGAAACGTAGAAGACTATGGCACCGTGACGATGTTCTTGAGGTCCTCACAAAAAACACAGGAACTGATGCAATTGAAGGCATAATGTTGGACATGACCAACCTAAAGCAGAAAGTTCCATTAGATGCTGAAACCTTTGAGAAGATGAGAAGACTTAGGATTCTCATAGTTCGGAACTCACAAGTTTCCGGAGCTCCCAATCATCTGCCAAATAATTTGAGATTTCTTGATTGGACTGAGTATCCTTTACCTTCTTTACCTGCTGATTTTTATCCAGAGACACTTGTTGTACTCAACTTGCCCAATAGTCTTCTCACAATGGATGAGCCATTCAAGGCATGTTCATGA 1878 0.3994 MANQDSCSTSSSNHGWTYDVFVSFHGKDTRRNFTGYLTDALDRKGIHTFRDDIKLKKGEGIPSALVKAIEESRIAVVVFSENYASSSWCLDELVEIMRCMKKKGQLVIPIFYSVDASVVRHQRESFGKSMEKHEARHDKETVNKWRIALKEAANLSGWSFKYGYEYKFIQQITEEISNMLNITSLHIADHPVGLNYRVSKMVRLVELKSNDDTKMVGIYGIGGIGKTTIARAVYNSISSRFEGSSFLADVRENTMKHGLVQLQETLLHNLLGENIKLGDVNRGIPIIKRRLCTKKVLLILDDVDNLRQLRSLAGSHDWFGSGSRIIITTRDKHLLTTHGVENENIYEVKQLNDDESLELFSLNAFRRKQPKENYVNIANRMVQYAKGLPLALNVIGSDLFGKTIEEWESALKKYERIPSREILDVLRVSYDNLDDNEKEIFLDIACFFKGNTRREVVNTLDASQFYPEYGIGVLIDKSLVTISDADTIKMHDLIQDLGRDIARKDSPFDPGKRRRLWHRDDVLEVLTKNTGTDAIEGIMLDMTNLKQKVPLDAETFEKMRRLRILIVRNSQVSGAPNHLPNNLRFLDWTEYPLPSLPADFYPETLVVLNLPNSLLTMDEPFKACS 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90758g00015 625 ProSiteProfiles TIR domain profile. 16 180 IPR000157 GO:0007165
Stsc90758g00015 625 SUPERFAMILY "Winged helix" DNA-binding domain 421 526 IPR036390 -
Stsc90758g00015 625 Gene3D - 14 185 IPR035897 -
Stsc90758g00015 625 FunFam Disease resistance protein (TIR-NBS-LRR class) 352 434 - -
Stsc90758g00015 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 444 IPR027417 -
Stsc90758g00015 625 Pfam NB-ARC domain 207 417 IPR002182 GO:0043531
Stsc90758g00015 625 SUPERFAMILY L domain-like 551 617 - -
Stsc90758g00015 625 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 158 IPR035897 -
Stsc90758g00015 625 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 182 - -
Stsc90758g00015 625 Gene3D - 186 346 IPR027417 -
Stsc90758g00015 625 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 615 IPR044974 GO:0006952
Stsc90758g00015 625 Gene3D - 350 434 IPR042197 -
Stsc90758g00015 625 PRINTS Disease resistance protein signature 290 304 - -
Stsc90758g00015 625 PRINTS Disease resistance protein signature 385 399 - -
Stsc90758g00015 625 PRINTS Disease resistance protein signature 215 230 - -
Stsc90758g00015 625 Pfam TIR domain 18 184 IPR000157 GO:0007165
Stsc90758g00015 625 SMART till_3 17 155 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90758g00015 Stsc-Chr90758 64293 66328 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90758g00015 18 614 WRKY Transcription Factor Family AT4G12020 31.363 7.42e-79 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90758g00015 - - pcin:129293148 860.136