Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90758g00011 ATGTCAACTTCATCTCTCACCCCTTCCTCTTCCTTTGCCAATAAATTTAAGTATGAGGTGTTCATCAGTTTTAGAGGCACTGATACTCGCAAAGATTTCACTTACAATCTCTACCAAGCTCTCCTTAGAAAGGGAATCAACACCTTCTTTGATGATGACAATCTTCGGAAAGGAGAGGAGATCACACCCAAACTTCTGGAGGCAATTGAAGGATCTAGAATTGCCATTGTTGTGTTCTCCAAGAACTACGCATCTTCTTCCTTTTGCTTACTTGAACTTGCCAAGATCATGGAGTGCATTAAGGGGAACAGCCGTTGGGTTTTTCCAGTCTTTTATGACGTTGATCCTAGTGAAGTGCGTCACCAAAAAGGAATCTACGGAGACGCATTGACTAAGCATGAGGGGAGGTTTAAAGATGACAAGGAGAAAGTGCTGAAATGGAGGGCAGCTCTGAAACAAACGGCTGACCTGTCTGGGAATCATTTCAAACTTGATCAAGGGGAATATGAATACGATTTTATTATGAAGATCGTGAATGAGATCTCAAACAGGATCGCTCGTGTTCCATTGCATGTTGAAGAATACACTGTTGGACTGGAATCTCGAGTACTAGAAGTAAAGAAGCTTCTGGATGGTGAATCTGATAATGGAGCCCATATGGTAGGGATATATGGTGTTGGTGGAATAGGTAAAACAACTCTTGCTAAAGCACTTTATAACTCGATTGCTGACCAATTTGAAGATTTGTGTTTTCTCGAAAATGTGAGGGAAAATTCAACTAGACATGGTTTAGTATACCTCCAATGGGAGCTTCTTTCTAGAATACCTGGAGTGAAAGATAGAAAGTCAACAAGCAAAAGTGAAGGAGTTTCATTAATAAAGCAAAGATTCCAGAGCAAGAAGATTCTCTTGGTTCTTGATGACGTTGACAAACCTGAGCAATTGCAGAAACTTGCTGGAAGTCCCAATTGGTTTGGTTCTGGCAGCATAATCATCATAACAACGCGGGATGAACGTTTGTTAGAAACTCAAATGGTTGTGAGAAGATATGAAGCAAAGGAATTTAATAAGGAAGAAGCACTCGAGTTACTTAGGTGGAAAGCTCTCAAATCTGAAAATGTTGATCCAAGTTATACGGACATTTTAAATAAAGTAGTGTCCTATGCTTCTGGACTTCCATTGGCACTCGAGGTAATAGGTTCAAATTTGTATGGAAGAAGTGTAGAAGAATGGATATCTGCGTTAGATGAGTATAAACAAATTCCTAATAAAGATATCCAAGAGACACTTAAAGTAAGCTTTGATGCTTTGGAGGAATATCATCAGACACTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATGTAGTTGCTATGATCTTGAAAATATACTTCATGCTCTTCATGATGTTAACCCGTCACTTGGTATTCGTGTGTTGGCTGAAAAATCTCTAATAAGGAATAAAGATGGCTATGTGACACAGCATGACCTGATTCAAGACATGGGAAGAGAAATTGTTCGGCAAGAATCACCAAAAGATCCTGGTCAACGTACCCGGTTATGGCTTCCTGAAGATATAATACGAGTTTTACAAGAGAACATTGGAACCAATAAAATCGAGCTCATGTTTCTGGAAGCTCCGATGTCTAAAGTAATAGATTGGGATGGAGAGGCCTTCAGAACGATGGGAAACCTCAAAGCACTTATTATTAAAAGAGGCAATTTTTTCAATGGTCCCAATCATCTTCCAAACAGTTTGAGAGTGTTGGAATGGTGTGGATATCCTTGGCATTCTTTGCCACCTGATTTTCATCCAGAGAAGCTTCCCATACTCAAGTTGCCCTACAATTGCTTTACACAACTCCAGAGTTTGAAAAGCTGA 1881 0.3966 MSTSSLTPSSSFANKFKYEVFISFRGTDTRKDFTYNLYQALLRKGINTFFDDDNLRKGEEITPKLLEAIEGSRIAIVVFSKNYASSSFCLLELAKIMECIKGNSRWVFPVFYDVDPSEVRHQKGIYGDALTKHEGRFKDDKEKVLKWRAALKQTADLSGNHFKLDQGEYEYDFIMKIVNEISNRIARVPLHVEEYTVGLESRVLEVKKLLDGESDNGAHMVGIYGVGGIGKTTLAKALYNSIADQFEDLCFLENVRENSTRHGLVYLQWELLSRIPGVKDRKSTSKSEGVSLIKQRFQSKKILLVLDDVDKPEQLQKLAGSPNWFGSGSIIIITTRDERLLETQMVVRRYEAKEFNKEEALELLRWKALKSENVDPSYTDILNKVVSYASGLPLALEVIGSNLYGRSVEEWISALDEYKQIPNKDIQETLKVSFDALEEYHQTLFLDIACCFKGCSCYDLENILHALHDVNPSLGIRVLAEKSLIRNKDGYVTQHDLIQDMGREIVRQESPKDPGQRTRLWLPEDIIRVLQENIGTNKIELMFLEAPMSKVIDWDGEAFRTMGNLKALIIKRGNFFNGPNHLPNSLRVLEWCGYPWHSLPPDFHPEKLPILKLPYNCFTQLQSLKS 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90758g00011 626 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 159 IPR035897 -
Stsc90758g00011 626 PRINTS Disease resistance protein signature 220 235 - -
Stsc90758g00011 626 PRINTS Disease resistance protein signature 389 403 - -
Stsc90758g00011 626 PRINTS Disease resistance protein signature 296 310 - -
Stsc90758g00011 626 ProSiteProfiles TIR domain profile. 16 185 IPR000157 GO:0007165
Stsc90758g00011 626 SUPERFAMILY "Winged helix" DNA-binding domain 425 531 IPR036390 -
Stsc90758g00011 626 Pfam TIR domain 17 184 IPR000157 GO:0007165
Stsc90758g00011 626 Gene3D - 188 348 IPR027417 -
Stsc90758g00011 626 SMART till_3 17 157 IPR000157 GO:0007165
Stsc90758g00011 626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 448 IPR027417 -
Stsc90758g00011 626 SUPERFAMILY L domain-like 541 623 - -
Stsc90758g00011 626 Gene3D - 355 438 IPR042197 -
Stsc90758g00011 626 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 622 IPR044974 GO:0006952
Stsc90758g00011 626 Gene3D - 12 187 IPR035897 -
Stsc90758g00011 626 Pfam NB-ARC domain 201 435 IPR002182 GO:0043531
Stsc90758g00011 626 SMART AAA_5 217 351 IPR003593 GO:0016887
Stsc90758g00011 626 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90758g00011 Stsc-Chr90758 42295 47686 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90758g00011 8 621 WRKY Transcription Factor Family AT4G12020 29.589 1.89e-59 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90758g00011 - - ahf:112801816 877.47