Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90758g00009 ATGTCAACGCCACCACTCACCTCTTCCTATTCCTCTTCCTTTTGCTATGCATTCACCTATGATGTGTTTATCAGCTTTAGAGGCTCTGATACTCGCTGCGGATTCACTAACAATCTTTACCAAGCTCTCCTTAGAAAAGGAATCCTCACCTTCTTTGATGATGACGGGCTTCGGAATGGAGAGGCAATCACCCGATCACTTGAAAAGGCAATTGAAGAATCTAGAATTGCCATTGTTGTGTTCTCCAAGAACTATGCATCTTCTTCCTTTTGCTTACATGAACTTGCCAAGATCATGGAGTGCATTAAGGGCAATGGCCGGTGGGTCTTTCCGGTCTTTTATGATGTTGATCCTAGTGAAGTGCGTCACCAAAAAGGAAGCTATGGAGAAGCGTTGACCAAGCATGAGGAGAGGTTCAAAGATGACAAAGAGCAAGTGCAGAAATGGAGGTCAGCTTTGCATCAAGCAGCTAACCTGTCCGGCAGTGATGTCAAACTTGAGGAATATGAACATGCTTTTATTGAGAAGATTGTGAAGGAGATCTCAAACAGGATCAGTCGCGTTCCCTTGAATGTTGCTGAGTACCCTGTTGGACTGGAATCTCGAGTACCAGAAGTAAACAAGCTTCTAAATGGAGGATCTAATTGCGGAGCCGATATGGTAGGAATATACGGAGTTGGTGGAATAGGTAAAACAACACTTGCTAAAGCAGTTTATAACTTGATTGCTGACCAATTTGAAGGTTTGTGTTTTCTCGAAAACAAGGTTCTCTTGTTTCTTGATGATGTTGACAAACTTGAGCAACTGAAGGCAATTGCTGGAAGGGCCGATTGGTTTGGTTCTGGAAGCATAATCATCATAACAACTCGGGACAAACATGTGTTGGCAAGTCATCTGGTGGAGAGAACATATCAAGTGAAGGAATTTGATGATAAAGAGGCACTTGAGTTGCTTAGTTGGAATGCTTTCAAACATGAAAATGTTGATCCAAGCTATATGGACATTTTAAATGAAGTAGTGTCCTATGCTTCTGGGCTCCCATTGGCACTGGAGGTAATAGGTTCAAATTTGCATGGAAGAAGTGTAGAAGAATGGATATCTGCGTTAGATGAGTATAAAAAAATCCCTAATAAAGATATCCAAAGAATACTTAAAGTAAGCTTTGATGCTTTAGGGGAATATCATCAAAATATTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATAGTGTGGCAGAGCTTGAACACATTCTCCACGCTCATCATGATGTTAGCCCGAAACTTGGCATTTGTGTGTTGGTTGAAAGATCTCTAATAAAGATTGATGAGTGCGGTTACCTGAGACAACATGACTTGATTCAAGATATGGGCTGA 1374 0.4119 MSTPPLTSSYSSSFCYAFTYDVFISFRGSDTRCGFTNNLYQALLRKGILTFFDDDGLRNGEAITRSLEKAIEESRIAIVVFSKNYASSSFCLHELAKIMECIKGNGRWVFPVFYDVDPSEVRHQKGSYGEALTKHEERFKDDKEQVQKWRSALHQAANLSGSDVKLEEYEHAFIEKIVKEISNRISRVPLNVAEYPVGLESRVPEVNKLLNGGSNCGADMVGIYGVGGIGKTTLAKAVYNLIADQFEGLCFLENKVLLFLDDVDKLEQLKAIAGRADWFGSGSIIIITTRDKHVLASHLVERTYQVKEFDDKEALELLSWNAFKHENVDPSYMDILNEVVSYASGLPLALEVIGSNLHGRSVEEWISALDEYKKIPNKDIQRILKVSFDALGEYHQNIFLDIACCFKGYSVAELEHILHAHHDVSPKLGICVLVERSLIKIDECGYLRQHDLIQDMG 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90758g00009 457 SUPERFAMILY "Winged helix" DNA-binding domain 379 457 IPR036390 -
Stsc90758g00009 457 Gene3D - 252 304 IPR027417 -
Stsc90758g00009 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 402 IPR027417 -
Stsc90758g00009 457 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 187 - -
Stsc90758g00009 457 Pfam TIR domain 20 185 IPR000157 GO:0007165
Stsc90758g00009 457 SMART till_3 19 159 IPR000157 GO:0007165
Stsc90758g00009 457 Gene3D - 17 187 IPR035897 -
Stsc90758g00009 457 Gene3D - 309 392 IPR042197 -
Stsc90758g00009 457 Gene3D - 188 251 IPR027417 -
Stsc90758g00009 457 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 254 IPR044974 GO:0006952
Stsc90758g00009 457 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 161 IPR035897 -
Stsc90758g00009 457 ProSiteProfiles TIR domain profile. 18 185 IPR000157 GO:0007165
Stsc90758g00009 457 Pfam NB-ARC domain 253 385 IPR002182 GO:0043531
Stsc90758g00009 457 Pfam NB-ARC domain 203 248 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90758g00009 Stsc-Chr90758 26323 27960 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90758g00009 197 457 WRKY Transcription Factor Family AT5G45050 34.098 3.15e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90758g00009 - - ahf:112801816 706.442