Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90758g00004 ATGTCAACTTCATCACTCTCCCCTTCCTATTCCTCTTCCTTTTGCTATGCATTCACCTATGATGTGTTTATCAGCTTTAGAGGCACTGATACTCGTTATGGTTTCTCTGGCAATCTCTACCAAGCTCTCAATAAAAAGGGGATCCACACCTTCTTTGATGATGAAAAGCTTCTGCAAGGAGAGGAGATCACACCCTCACTTCTCAATGCAATTGAAGAATCTAGAATTGCCGTTGTTGTGTTCTCCAAGAACTATGCATCTTCTTCCTTTTGCTTACATGAACTTGCCAAGATCATGGAGTGCGTTAAGGGGAAGAACCGGTGGGTCTTGCCAGTCTTTTATGATGTTGATCCTAGTGAAGTGCGTCACCAAAAAGGAAGCTATGGAGAAGCGTTGACCAAGCATGAGGAGAGGTTCAAAGATGACACAGAGAAAGTGCAGAAATGGAGGTCAGCTCTGCATCAAGCGGCTAACCTGTCTGGCAATCATTTCAAATTTCAGAAGGAATATGAACATGCCTTTATTGAGAAGATCGTGAAGGAGATCTCAAACAGGATCGCTCGTGTTCCTTTGCATGTTGCTGATTACCCTGTTGGACTGGAATCTCGAGTACCAGAAGTAAATAAGCTTCTAGATGGTGGATCTAATAGAGGAGCCCATATGGTAGGGATATATGGAGTTGGTGGAATAGGTAAAACAACTCTTGCTAAAGCACTTTATAACTTGATTGCTGACCAATTTGATGGTTTGTGTTTTCTCGAAAATGTGAGGGAAAATTCAATTAAACATGGTTTAGCATATCTCCAGGAGAGTTTTCTTTGTAAGATACTTGGAGAGAAAGATATAAAGCTAGCAAGTGTAAGTGAAGGAATTTCATTAATAAAGCAAAGGTTCAAGAGAAAGAAGATTCTCTTGGTTCTTGATGACATTGATAAACTTGAGCAATTGCAGGCAATTGCTGGAAGCCCCAATTGGTTTGGTTCTGGTAGCAGAGTCATCATAACAACTCAGGACACACATTTGTTAGCAAGTCATTCAGTTGATAGAAAATACCAAGTGGAGGAACTTGATGAAAAAGAGGCTCTAGAGTTGCTTAGGTGGAATGCTTTCAAATATGAAAATGTTGATCCAAGCTATATGGACATTTTAAATAAGGTTGTTTCCTATGTTTCTGGCGTTCCTTTGGCTTCCGTGGTAATAGGGTCAAATTTGTATGGAAGGAATGTAGAAGAGTGGATATCTGCACTAGATGAGTATAAAAAGATCCCTAATAAAGATATCCAAAAGAAACTTAAAGTAAGTTTTGATGCTTTGGAGCCATATCATCAGAAACTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATACAGTTTGGTAGAGCTTGAAGATATACTTCATGCTTTTCATGATGTTAGCCCGAAATTTGGTATTAGCGTGTTGGTTGAAAGGTCTTTAATAAAGATTGATGAGAACGGCTATGTGAGACAGCATGACCTGGTTCAATATATGGGCCGAGAAATTGTTCGTCAAGAATCACCAGAAAATCCTGGCAAACGTAGTCGGTTATGGCTTCATGATGATGTTATGCAAGTTTTACAAGAGAAGATTGTAAGTAAACTTATTGGAATGGTTTTGGTTTTTATCATACAATAA 1653 0.3908 MSTSSLSPSYSSSFCYAFTYDVFISFRGTDTRYGFSGNLYQALNKKGIHTFFDDEKLLQGEEITPSLLNAIEESRIAVVVFSKNYASSSFCLHELAKIMECVKGKNRWVLPVFYDVDPSEVRHQKGSYGEALTKHEERFKDDTEKVQKWRSALHQAANLSGNHFKFQKEYEHAFIEKIVKEISNRIARVPLHVADYPVGLESRVPEVNKLLDGGSNRGAHMVGIYGVGGIGKTTLAKALYNLIADQFDGLCFLENVRENSIKHGLAYLQESFLCKILGEKDIKLASVSEGISLIKQRFKRKKILLVLDDIDKLEQLQAIAGSPNWFGSGSRVIITTQDTHLLASHSVDRKYQVEELDEKEALELLRWNAFKYENVDPSYMDILNKVVSYVSGVPLASVVIGSNLYGRNVEEWISALDEYKKIPNKDIQKKLKVSFDALEPYHQKLFLDIACCFKGYSLVELEDILHAFHDVSPKFGISVLVERSLIKIDENGYVRQHDLVQYMGREIVRQESPENPGKRSRLWLHDDVMQVLQEKIVSKLIGMVLVFIIQ 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90758g00004 550 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 534 IPR044974 GO:0006952
Stsc90758g00004 550 SMART AAA_5 218 357 IPR003593 GO:0016887
Stsc90758g00004 550 Gene3D - 15 188 IPR035897 -
Stsc90758g00004 550 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 188 - -
Stsc90758g00004 550 SUPERFAMILY "Winged helix" DNA-binding domain 426 533 IPR036390 -
Stsc90758g00004 550 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 161 IPR035897 -
Stsc90758g00004 550 SMART till_3 19 159 IPR000157 GO:0007165
Stsc90758g00004 550 Pfam NB-ARC domain 202 432 IPR002182 GO:0043531
Stsc90758g00004 550 Gene3D - 189 353 IPR027417 -
Stsc90758g00004 550 Pfam TIR domain 20 185 IPR000157 GO:0007165
Stsc90758g00004 550 PRINTS Disease resistance protein signature 390 404 - -
Stsc90758g00004 550 PRINTS Disease resistance protein signature 297 311 - -
Stsc90758g00004 550 PRINTS Disease resistance protein signature 221 236 - -
Stsc90758g00004 550 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 449 IPR027417 -
Stsc90758g00004 550 ProSiteProfiles TIR domain profile. 18 186 IPR000157 GO:0007165
Stsc90758g00004 550 Gene3D - 355 439 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90758g00004 Stsc-Chr90758 7975 9815 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90758g00004 198 535 WRKY Transcription Factor Family AT5G45050 32.941 1.46e-46 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90758g00004 - - ahf:112801816 853.203