Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90757g00017 ATGGATCCAGAATCCAAACCCCAAACCTTTAATTCCACACATTTATTCCTCGCTGCCACAGAAGCCACCACTCATTCCGAACAACTACCACCCTCACTCTCCCTCACCACCGTTCCCTCCACCGTCCCACGCTCCAAATTCATCCCAAACACTCGCTTCCTTGTCGACGCCTTCCGCCACGCCGACACCGCATTCTCCGTCTCCTACTTCCTCTCTCACTTCCACTCCGATCACTACACCGGCCTCTCCCATTCTTGGTCCCGCGGAATTGTCTTCTGCTCCGCCACCACCGCCTCCCTCCTCCAACGAATCCTCGGAGTCCCCGAACGCTTCGTCGTATCCCTTCCCCTTCGCCTGCCCGTTGAAATCGACGGCGCGGAGGTCACCCTGGTCGACGCGAACCACTGCCCCGGCGCGGTCCAGTTCCTCTTCAAGGTTCCAACAAAAGAAGAAGGGAAGGAATTCGAGAGGTATGTTCACACTGGCGATTTTAGGTTTTGTAGTTCAATGATATTGGAGCCTGCAATTGTTGATTTTGTTGGCTGTGATGCTGTGTTCTTGGATACTACTTATTGCAACCCAAAGTTTGTATTTCCTTCGCAAGAGGAGAGTGTTGATTATGTGGTTAGCGTAGTGGAGAGGGTTATTGGTGATTGTGGTGGTGATGCTGGTGGTGGTGGTGTTTTGTTTCTTGTTGCTACTTATGTTATTGGGAAGGAGAAGATTTTGCTTGAACTTGCGCGGCGATTGAAGAGGAAGGTGCATGTGGATGCTAGGAAAATGGAGGTTTTGAGGGTGCTTGGTTTTGGAGATAGTGGTGTGTTTACTGAGGACGGATCGGAGATGAGGACCAAGGATTCGTTTGAGATTCATCTCGTGCCGTATAGTGAGCATTCCAACTACGAGGAGCTCAGGGAGTATGTGAAGTTTTTGAAGCCAAAGCATGTTGTTCCAACTGTGGGTTTGGATGTTGAGAAAAGTGACAGTAAGCATGCTGACAAAATGAGGAAGTATTTTGCTGGATTGGTTGATGAGATGGCTAACAAGCATGACTTTCTAAAGGGATTTCACCGTGCCACGGGTGAAGCGAGTTTCTTGGTTGAGAAGGACGTTGATGATTCTCAGAAGCCAGGAAAAAACAAGGAGGAAGGACTCAAGTCATCTGAGTCGGATGGCGAGGAAAGTAAAAATCCATATGTTGCTGCTAGTTTGCTTTCTTCTACCGGGGAACCATGTACAGAAGGTCTTACTTTACTAACTGATGAAGAAAAAGAGAAAATGGTTGAAGAACTTAGTAATTGTTTGCCAGCATGGGTCACTCGAAGCCAAATGTTAGAGCTGATCAGCATCGCTGGGAGCAATGTTGTTGAAGCTGTTTCTAAATTTTATGAATGTGAAACTGAATTTCACAAGCAAGCATTTTCTTGTCAAACTTCTTCAGTGTCCAAGTGCAGCTCACCAAATGACATAGGTTCTCCTTCAAAAGCTATCCTGAATTCAAGCAGCACTACGAAAAATATTGATGTTTTTCCAAGCCAAGGCTCTACTAAACTAACTAACTTGAAGCATACAGTTCCAATTCAAGTTTCCCCTGCCAAAAGGAATAAAAGTAGTGGAAGTAAGGCAAACAAGAAAGCAAAAGTCAAAGCAAAGTCACAGTCACAATTAAGTGATTCAAAGCAGTCCACAATAACAAACTTCTTCAGCAAAGTATTGCCTGTAAAGTCTAGTGTTGCTCAGTCTGATCGTTCAGAATTGAAGATTGGCGAAAACCCTAAATCTGAAAACATGTCGCCAGCTGATGTTGGAAATCTGTACAAGGATGAGATTGATCAGTTTATGCAAATAATAAATGGGGAGGATTCATTAAAAGATTATGCCATCACTATAATTGAGAAGGCAAAAGGAGATGTAAATAAGGCATTGGATATATATTACTGTAATTCTGGAAATCTTGGCGAAAATGAAATTTCAGTTCAAGCAGAGTGTAAAACTAATAGCTCTATAGAGAAGAATTGTGTGTTACATGAATTGAAAGGTATTCCAGATACCATCGTGAAGAGTACTCATGTATCTCTACCACTTGAGAAATACAATCCTAAAGAGCATGCATGTTGGAAAGATGGGCAGCCTGCACCATATTTACATCTTGCACGAACCTTCAGCCTTCTCGATGATGAGAAAGGAAAGATAAAAGCTACTTCAATGTTATGCAATACATTCCGAAGTTTGCTGGCCTTGTCTCCAGCAGATGTGCTGCCTGCTGTGTACCTATGTACAAACAAAATTGCGGCAGACCATGAAAATATGGAACTAAACATTGGTGGAAGTATAGTTACTGCAGCACTTGAAGAGGCATGCGGAACAAATCGATCCAAAATAAGGGAGATGTATAACAAATTTGGTGATCTTGGTGATGTCGCCCAAGAGTGTCGTCAAACACAGAGATTGCTTGCACCACCTACACCACTTCTGATTAAGGATGTTTTCTCTGCATTACAAAAGATAAGTGTACAAACAGGCAATGGAAGCACATCTCGGAAGAAAGGCATCATTGTTCGTCTCATGCGCTCTTGTCGTGAGAAGGAGATTAAATTTCTTGTTCGGACCTTGGTCAGGAACTTAAGGATTGGGGCAATGCTTAGAACTGTTTTACCTGCCTTGGCTCAAGCTGTTGTTATGAATGCTTCCCCTACAATGCAACAAGAAAGAATTGCAGATAATTTGAAGGAGAAGCTTCAGGTCCTTTCAGTGGAAATTGTTGAAGCATATAACATACTTCCAAATTTGGATGTCATAGTTCCATCTCTCATGAACAAAGGAATTGATTTTTCGGTTTCAAGTTTGTCAATGGTTCCTGGAATTCCTATTAAGCCTATGCTTGCAAAGATCACCAATGGCATTCCTCAAGCATTAAACCTATTTCAAAATAAGGCATTTACTTGTGAATATAAGTATGATGGTCAGCGAGCTCAAATTCACAGATTAGCTGATGGATCAATTCGTGTTTTTTCAAGAAAAGGAGATGAATCAACATCAAGATTTCCTGATCTTATTGATATAATTAAGGAATCCTGCAAGCCTGTTGCGTCGACTTTCATAATTGATGCTGAAGTTGTTGGTATTGATAGGAAAAATGGATTTAGGATTATGTCTTTCCAGGAGTTATCTTCACGTGGTAGAGGAAGCAAAGATACTCTTGTTACTACAGAGAGCATAAAGGCTATTGGGTTTTCCTCTTCGCTCAAGACGAAAATATCTAAAGGATTTGTTCTGTGA 3279 0.4245 MDPESKPQTFNSTHLFLAATEATTHSEQLPPSLSLTTVPSTVPRSKFIPNTRFLVDAFRHADTAFSVSYFLSHFHSDHYTGLSHSWSRGIVFCSATTASLLQRILGVPERFVVSLPLRLPVEIDGAEVTLVDANHCPGAVQFLFKVPTKEEGKEFERYVHTGDFRFCSSMILEPAIVDFVGCDAVFLDTTYCNPKFVFPSQEESVDYVVSVVERVIGDCGGDAGGGGVLFLVATYVIGKEKILLELARRLKRKVHVDARKMEVLRVLGFGDSGVFTEDGSEMRTKDSFEIHLVPYSEHSNYEELREYVKFLKPKHVVPTVGLDVEKSDSKHADKMRKYFAGLVDEMANKHDFLKGFHRATGEASFLVEKDVDDSQKPGKNKEEGLKSSESDGEESKNPYVAASLLSSTGEPCTEGLTLLTDEEKEKMVEELSNCLPAWVTRSQMLELISIAGSNVVEAVSKFYECETEFHKQAFSCQTSSVSKCSSPNDIGSPSKAILNSSSTTKNIDVFPSQGSTKLTNLKHTVPIQVSPAKRNKSSGSKANKKAKVKAKSQSQLSDSKQSTITNFFSKVLPVKSSVAQSDRSELKIGENPKSENMSPADVGNLYKDEIDQFMQIINGEDSLKDYAITIIEKAKGDVNKALDIYYCNSGNLGENEISVQAECKTNSSIEKNCVLHELKGIPDTIVKSTHVSLPLEKYNPKEHACWKDGQPAPYLHLARTFSLLDDEKGKIKATSMLCNTFRSLLALSPADVLPAVYLCTNKIAADHENMELNIGGSIVTAALEEACGTNRSKIREMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISVQTGNGSTSRKKGIIVRLMRSCREKEIKFLVRTLVRNLRIGAMLRTVLPALAQAVVMNASPTMQQERIADNLKEKLQVLSVEIVEAYNILPNLDVIVPSLMNKGIDFSVSSLSMVPGIPIKPMLAKITNGIPQALNLFQNKAFTCEYKYDGQRAQIHRLADGSIRVFSRKGDESTSRFPDLIDIIKESCKPVASTFIIDAEVVGIDRKNGFRIMSFQELSSRGRGSKDTLVTTESIKAIGFSSSLKTKISKGFVL 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90757g00017 1092 Gene3D DNA ligase/mRNA capping enzyme 959 1078 - -
Stsc90757g00017 1092 MobiDBLite consensus disorder prediction 367 393 - -
Stsc90757g00017 1092 SUPERFAMILY Metallo-hydrolase/oxidoreductase 49 321 IPR036866 -
Stsc90757g00017 1092 MobiDBLite consensus disorder prediction 525 557 - -
Stsc90757g00017 1092 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 262 1074 - -
Stsc90757g00017 1092 MobiDBLite consensus disorder prediction 581 601 - -
Stsc90757g00017 1092 Pfam ATP dependent DNA ligase domain 959 1067 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Stsc90757g00017 1092 Pfam DNA ligase N terminus 713 889 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc90757g00017 1092 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 983 991 IPR016059 GO:0003909
Stsc90757g00017 1092 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 694 942 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc90757g00017 1092 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 915 1057 - -
Stsc90757g00017 1092 Gene3D - 40 216 IPR036866 -
Stsc90757g00017 1092 Pfam DNA repair metallo-beta-lactamase 281 321 IPR011084 -
Stsc90757g00017 1092 CDD SNM1A-1C-like_MBL-fold 30 194 - -
Stsc90757g00017 1092 Gene3D - 691 958 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Stsc90757g00017 1092 MobiDBLite consensus disorder prediction 367 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90757g00017 Stsc-Chr90757 61604 67341 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90757g00017 698 1061 Core DNA Replication Machinery Family AT1G08130 37.363 1.16e-77 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90757g00017 - - aip:107635689 1733.38