Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90757g00016 ATGGTGAAAACGTTGGATGTAGATGCTGGTTATTCTCCATCAAAGCGATCTGATAAATGGCTAAAGGTCAAGCGAGATTATGTCGAAGGTTTAAATGATACTCTTGATTTAGTGCCAATTGGAGCTTGGTATGGAAATGGAAGGAAAGCCGGATGGTATAGTCCATTTCTCATGGCATGTTATAATCCTGAAACTGAGGAATATCAAAGCGTGTGCCGTGTGATGTCTGGGTTCTCAGATGAATTTTACAAAGAGATGAAAGAATTCTTCTCTGAGGACAAAGTCTTAACCCAAAAGCCGCTGTATTATCGAACAGCGGAGGAGCCTGACATGTGGTTTTGTCCACAACTCGTTTGGGAGATACGAGGTGCAGACTTCACGGTGTCCCCTGTCCATCATGCAGCCATCGGTTTAGTTCATCCGTCTCGAGGCATCTCAATCCGGTTTCCGAGATTTATTACCCGTGTTTCAGACAGAAACCCAGAAGAGTGTAGCACAGCTGCAGATATTGCTGATATGTTTCATTCTCAGACAAGGAAGATAGATGTCACAGCTGAAGATTGA 564 0.4362 MVKTLDVDAGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWYGNGRKAGWYSPFLMACYNPETEEYQSVCRVMSGFSDEFYKEMKEFFSEDKVLTQKPLYYRTAEEPDMWFCPQLVWEIRGADFTVSPVHHAAIGLVHPSRGISIRFPRFITRVSDRNPEECSTAADIADMFHSQTRKIDVTAED 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90757g00016 187 Gene3D - 30 186 IPR012340 -
Stsc90757g00016 187 CDD OBF_DNA_ligase_I 33 176 - -
Stsc90757g00016 187 Gene3D - 1 29 - -
Stsc90757g00016 187 ProSiteProfiles ATP-dependent DNA ligase family profile. 1 62 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Stsc90757g00016 187 Pfam ATP dependent DNA ligase C terminal region 50 155 IPR012309 GO:0003910|GO:0006281|GO:0006310
Stsc90757g00016 187 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 1 179 - -
Stsc90757g00016 187 FunFam DNA ligase 29 186 - -
Stsc90757g00016 187 SUPERFAMILY Nucleic acid-binding proteins 33 177 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90757g00016 Stsc-Chr90757 60389 61388 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90757g00016 1 177 Core DNA Replication Machinery Family AT1G08130 46.369 3.16e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90757g00016 - - aip:107635689 362.073