Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90757g00014 ATGATAACCAAGATTGAGGGTAGAGGTAATGGCATCAAAACCAATATTGTCAATATGGTTGACATTGCGAAGGCATTGGCAAGGCCGGCATCTTACACTACCAAGTATTTCGGTTGTGAGCTTGGAGCACAATCGAAATTCGATGAGAAAACTGGCACTTCTCATGTTAATGGAGCGCATGATACTGCAAAGCTTGCAAGCCTGCTTGAGAACTTCATTAAGAAATATGTCCAATGCTACGGTTGTGGAAATCCCGAAACTGAGATTCTGATTACGAAGAGTCAAATGATCCAGCTGAAGTGTGCTGCTTGCGGTTTTGTGTCTGATGTGGACATGAGAGACAAGCTGACTACCTTCATCGTCAAGAACCCTCCCGAAGCAAAGAAAGGATCAAAAGACAAGAAGGCCATGAGGAGAGCTGAGAAGGAGAGGATGAAGGAAGGTGAAATGGCTGATGAGGAACAGAAGAAACTGAAGAAAGAGGTACTTAAGAAGAAAGGCACTTCATCATCAAAGGATGGCACCGTAAAATCTAATAAGAAGAAAGCTGGTGGCTCTGATGAAGAACGTGTATCTCCTACACACAGTCAAATTGATGAGAAAGAGGAGGCACACGACGAAGATGATGATGATGATGATGTTCAGTGGCAAACAGATACATCTATTGATGCTGCCCGTCAACGAATTCAGGAACAGTTAAGTGCTGTGACTGCTGATATGGTCATGCTCTCAACAAATGAACCAGAGAAGAAGAAGAAGGCAGAAAGCAAGGGTTCTGAGAATGTTAACACTGTGAACTACGAGACAGTGGTTGGTGAAGTGAAAGCATATTTGAAGAAAGGTGTTGCAGCGAAGGAATTGCTGTCACATATTGCTGCATTTCCTGTATCTGCTCAGGAAAAGATGAATGCACTTCTTGAAGGATTATTTGATGGCATCGAGAAGGGGTTTGCGAAAGAAGCTATCAAGAGGAAGAATTACCTTGCTGCTGCAGTTGCTGGTGATGAAGAGGGATTGCAGCTGTTATTGCTTAATGCTGTTGAGGAGTTATGTTGCAAGAAAGCTAGCAGTGCATTGAAGGAGGTTGCACTTATTCTGAAAGCCCTCTATGATGCTGATTTAGTGGAGGAAGAGCACATAGTGCATTGGTATTCAAAGGGACTGAAGGGTGACAAGAAGGACTCTCAGATATGGAAGAATGTTCAACCATTCATTGATTGGCTTCAGAATGCTGAATCAGAATCGGAGGAAGAATGA 1257 0.4312 MITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLASLLENFIKKYVQCYGCGNPETEILITKSQMIQLKCAACGFVSDVDMRDKLTTFIVKNPPEAKKGSKDKKAMRRAEKERMKEGEMADEEQKKLKKEVLKKKGTSSSKDGTVKSNKKKAGGSDEERVSPTHSQIDEKEEAHDEDDDDDDVQWQTDTSIDAARQRIQEQLSAVTADMVMLSTNEPEKKKKAESKGSENVNTVNYETVVGEVKAYLKKGVAAKELLSHIAAFPVSAQEKMNALLEGLFDGIEKGFAKEAIKRKNYLAAAVAGDEEGLQLLLLNAVEELCCKKASSALKEVALILKALYDADLVEEEHIVHWYSKGLKGDKKDSQIWKNVQPFIDWLQNAESESEEE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90757g00014 418 SMART 542_3 325 414 IPR003307 GO:0005515
Stsc90757g00014 418 FunFam Eukaryotic translation initiation factor 5 83 123 - -
Stsc90757g00014 418 Coils Coil 137 157 - -
Stsc90757g00014 418 FunFam Eukaryotic translation initiation factor 5 1 82 - -
Stsc90757g00014 418 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 4 79 IPR016189 GO:0003743|GO:0006413
Stsc90757g00014 418 MobiDBLite consensus disorder prediction 126 202 - -
Stsc90757g00014 418 Gene3D - 1 82 - -
Stsc90757g00014 418 Gene3D - 257 418 - -
Stsc90757g00014 418 MobiDBLite consensus disorder prediction 123 215 - -
Stsc90757g00014 418 Pfam eIF4-gamma/eIF5/eIF2-epsilon 340 418 IPR003307 GO:0005515
Stsc90757g00014 418 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 417 IPR045196 GO:0003743|GO:0006413
Stsc90757g00014 418 CDD W2_eIF5 266 416 - -
Stsc90757g00014 418 Gene3D - 83 123 - -
Stsc90757g00014 418 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 76 111 IPR016190 GO:0003743|GO:0006413
Stsc90757g00014 418 SMART eIF2Bneu4 1 107 IPR002735 GO:0003743|GO:0006413
Stsc90757g00014 418 ProSiteProfiles W2 domain profile. 257 418 IPR003307 GO:0005515
Stsc90757g00014 418 SUPERFAMILY ARM repeat 266 412 IPR016024 -
Stsc90757g00014 418 Pfam Domain found in IF2B/IF5 3 105 IPR002735 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90757g00014 Stsc-Chr90757 49657 51006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90757g00014 1 411 Eukaryotic Initiation Factors Gene Family AT1G77840 61.962 4.98e-166 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90757g00014 K03262 - gmx:100777906 622.468