Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90757g00013 ATGGATGAACAAACTAAGTCGTTGCCGTCATCATCATCATCATCCGCTAATAATATATTGGTAGAATGCCGAATATGCCACAATGAAGATGAAGAGTCACACATGGAGGCACCATGTTCATGTTCTGGCACCTTGAAGTATGCACATAGAAACTGTGTTCAGAGATGGTGCAATGAGAAAGGTGATACTACCTGTGAGATTTGCCTACAGCAATTTACACCAGGCTACACTGCACCCCCACCACCACCTACTTCCTTAATCCATTACGGTGGATCTCCGACGAATTTTGGATGGAATAACTATTGGGAGATTTCAAGAACAGAACTTTACAATAACAATAATCAATTTGCAGCAAGAGAACTGTTTGGTGCTGATCATGATCTAGACCCTGACATTGGAGGATATTCAGCACCCTCTACAAGGTCCATGATATGCTGCCGCATAGTTGCCACTATTTTTCTTGTTCTTGTTATTTTAAGGCATACACTTCAAGTTATACTGATACTCAGTGAAACAGAAGAGTATTCATTAGCAGTGGTTATGGTATTACTGTTGGGAATCTTTGGGATATTGATATCGGTGCATATGATGGTAAAAGCTAACTACTATAGTCCAAGGACTTCAATACCAGGTCACAACATCTATTCTTAA 651 0.4009 MDEQTKSLPSSSSSSANNILVECRICHNEDEESHMEAPCSCSGTLKYAHRNCVQRWCNEKGDTTCEICLQQFTPGYTAPPPPPTSLIHYGGSPTNFGWNNYWEISRTELYNNNNQFAARELFGADHDLDPDIGGYSAPSTRSMICCRIVATIFLVLVILRHTLQVILILSETEEYSLAVVMVLLLGIFGILISVHMMVKANYYSPRTSIPGHNIYS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90757g00013 216 FunFam Zinc finger family protein 11 78 - -
Stsc90757g00013 216 CDD RING_CH-C4HC3_MARCH 23 68 - -
Stsc90757g00013 216 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 10 201 IPR033275 -
Stsc90757g00013 216 SMART ringv_2 22 69 IPR011016 GO:0008270
Stsc90757g00013 216 Pfam RING-variant domain 23 68 IPR011016 GO:0008270
Stsc90757g00013 216 ProSiteProfiles Zinc finger RING-CH-type profile. 15 75 IPR011016 GO:0008270
Stsc90757g00013 216 Pfam Protein of unknown function (DUF3675) 74 200 IPR022143 -
Stsc90757g00013 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 77 IPR013083 -
Stsc90757g00013 216 SUPERFAMILY RING/U-box 21 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90757g00013 Stsc-Chr90757 47855 49134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90757g00013 22 68 C3H Transcription Factor Family AT2G37950 50.000 3.18e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90757g00013 - - gmx:100784696 221.476