Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90755g00010 ATGTTCCCAGCAGTTATGTCCAATTCCACTTCTTTGTCTGAAGAAGCAAGTGTCTCTTCTGGTACAAGAATTCAAGACTTTGTTGGTTCTACCTTAAACCATGTTGTTTCAACCATTTCTCCTCCTCCTCAACAACAACAACCTCAACCTCCTCAAAAGATCAAGAAAAAGAGAAGCCTCCCCGGAAATCCAGACCCAGATGCTGAAGTGATAGCTTTATCACCAAAGACACTATTAGCAACAAATAGGTTTGTGTGTGAGATCTGCAACAAAGGGTTCCAAAGGGATCAAAACCTTCAGCTGCATAGAAGAGGGCACAATCTTCCATGGAAGCTGAAGCAAAGGAACAACAAAGAAGTGGTGAAGAAGAGAGCATATGTTTGCCCTGAGCCTTCATGTGTTCATCACAATCCTTCAAGGGCTCTTGGGGACCTCACTGGAATCAAGAAGCATTATTGTAGAAAACATGGCGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGATCTATGCTGTTCAATCTGATTGGAAGGCTCATTCTAAAACTTGTGGTACTAGAGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGACAGTTTCATAACACATAGGGCATTCTGTGATGCATTGGCTGAAGAGAGTGCAAGGCTTTCAGCAAACCACCACCATCAATTACTCACAACAACAACACCATCACCCTCAAATCCATTACTCCAATCCCTCTTCCTTTTCCCAACCCAACAACATCATCAAACTTTCCAAAACAATTTCATCAACAACAACAACATTAATCCCTGGGACCCACAATCATCATCTCAAGATCAAAACCCTAACCCTAATAACAACAACAACAACTTCCCTCCTCCACCTCCTCCTCCTCCCACCACCATTACTATTAAGCCTGAAGCTCAAAACTTTCACATCCCAAATTCCGATAATGCCCCTCCATTGTTCCTTCACCAGAACCAGAATAAGAATAACAACATGATGATGACGTCACCCTTCCGGAACAACCCACACGTGCGCATGCAACCACAATCCAACAATGCTAATTCTAATGCTGCTGCTGCCACGTCAGCACATCTCTCAGCCACTGCACTCCTCCAGAAGGCCGCCACGGTGGGCGCGGCCGCCATCACAGGCCCTAACGCCTCACTCGGAGCTGGCCATCACGTGACTGAGCTCGGTGACATGACTCAGCTTGACTCGGTTCATTTCATGAACAACATGGGAGGGTTCAGCAACAACAATGTCAAGAGCCTCAAGAGTAGTGATGATCTTACAAGAGACTTTCTAGGGTTAACTGATGATGCCAACGGTGGAGGTGGCCACGGTGGCGGAGCAAACGGTGGCACAGTTGACGTTAGCATGAACATGAAGAACATGCTAACATACACCGGGAACATAGATTACCAACACCAACACCGTCACCATCGCCAGCAACTACTGTTTAAATCACCACAACAAGGTTTTGGATTTCTTGGAACAACTACTGCCCCAGAATCATGGGGCAACTGTTGA 1527 0.4558 MFPAVMSNSTSLSEEASVSSGTRIQDFVGSTLNHVVSTISPPPQQQQPQPPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVVKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANHHHQLLTTTTPSPSNPLLQSLFLFPTQQHHQTFQNNFINNNNINPWDPQSSSQDQNPNPNNNNNNFPPPPPPPPTTITIKPEAQNFHIPNSDNAPPLFLHQNQNKNNNMMMTSPFRNNPHVRMQPQSNNANSNAAAATSAHLSATALLQKAATVGAAAITGPNASLGAGHHVTELGDMTQLDSVHFMNNMGGFSNNNVKSLKSSDDLTRDFLGLTDDANGGGGHGGGANGGTVDVSMNMKNMLTYTGNIDYQHQHRHHRQQLLFKSPQQGFGFLGTTTAPESWGNC 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90755g00010 508 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Stsc90755g00010 508 MobiDBLite consensus disorder prediction 259 283 - -
Stsc90755g00010 508 MobiDBLite consensus disorder prediction 259 330 - -
Stsc90755g00010 508 MobiDBLite consensus disorder prediction 1 20 - -
Stsc90755g00010 508 MobiDBLite consensus disorder prediction 35 67 - -
Stsc90755g00010 508 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Stsc90755g00010 508 Pfam Zinc finger, C2H2 type 84 106 IPR013087 -
Stsc90755g00010 508 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 44 466 IPR031140 -
Stsc90755g00010 508 MobiDBLite consensus disorder prediction 301 330 - -
Stsc90755g00010 508 FunFam protein indeterminate-domain 12-like 63 132 - -
Stsc90755g00010 508 MobiDBLite consensus disorder prediction 284 300 - -
Stsc90755g00010 508 Gene3D Classic Zinc Finger 138 218 - -
Stsc90755g00010 508 FunFam protein indeterminate-domain 5, chloroplastic-like 139 218 - -
Stsc90755g00010 508 SUPERFAMILY beta-beta-alpha zinc fingers 83 181 IPR036236 -
Stsc90755g00010 508 SMART c2h2final6 161 181 IPR013087 -
Stsc90755g00010 508 SMART c2h2final6 84 106 IPR013087 -
Stsc90755g00010 508 SMART c2h2final6 126 156 IPR013087 -
Stsc90755g00010 508 Gene3D Classic Zinc Finger 63 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90755g00010 Stsc-Chr90755 90481 95607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90755g00010 15 219 IDZ Gene Family AT4G02670 76.555 3.64e-115 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc90755g00010 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90755g00010 K25870 - gmx:100812496 549.666