Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90754g00009 ATGTCTTTGTCTTTGAAGGAAGGTAGGGAAGTTGAACAAAAGAAGCATGGTAGAAGGGGACACCAGAAACCAAATGAAGATGCTAAGCTCAAAAAGCTTGTTGCAAAATTTGGTGCTAAGAGTTGGAACTTCATCGCTCAGCATATTACAGGAAGATCTGGAAAAAGTTATAGATTGAGGTGGTTTAATCAGCTAGATCCTAGAATTATCAAAACGGCTTTCATTAAGGAAGAAGAGCAGAAGCTCTTAGCAGCTCAAAGGTTGTATGGTAACAAATGGGCCAAAATATCAAGACTCTTTCCTGGCCGTACAGATAATTCTCTTAAGAATCATTGGCATATCATGATGGCTAGGAAGCAAAGGGAGCACTCAATTGCCCTTAGAATAAGAAACAAAACGCCCACACTTGTTAATCAAATAACTCAAAATGTTTTGGATACCATTACATCAAACAATCATGTTGCTCTACTAATGAATCAGTTATCTCAACAAACGTTGAAGAATCTCCTTCCACCTATGCAAACCTCACTACCATGA 537 0.3836 MSLSLKEGREVEQKKHGRRGHQKPNEDAKLKKLVAKFGAKSWNFIAQHITGRSGKSYRLRWFNQLDPRIIKTAFIKEEEQKLLAAQRLYGNKWAKISRLFPGRTDNSLKNHWHIMMARKQREHSIALRIRNKTPTLVNQITQNVLDTITSNNHVALLMNQLSQQTLKNLLPPMQTSLP 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90754g00009 178 MobiDBLite consensus disorder prediction 7 27 - -
Stsc90754g00009 178 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 65 IPR017930 -
Stsc90754g00009 178 MobiDBLite consensus disorder prediction 1 27 - -
Stsc90754g00009 178 Gene3D - 72 143 - -
Stsc90754g00009 178 Pfam Myb-like DNA-binding domain 24 65 IPR001005 -
Stsc90754g00009 178 Pfam Myb-like DNA-binding domain 74 113 IPR001005 -
Stsc90754g00009 178 CDD SANT 26 63 IPR001005 -
Stsc90754g00009 178 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Stsc90754g00009 178 SUPERFAMILY Homeodomain-like 24 112 IPR009057 -
Stsc90754g00009 178 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Stsc90754g00009 178 PANTHER MYB PROTEIN-RELATED 19 140 - -
Stsc90754g00009 178 CDD SANT 76 113 IPR001005 -
Stsc90754g00009 178 Gene3D - 18 70 - -
Stsc90754g00009 178 SMART sant 18 67 IPR001005 -
Stsc90754g00009 178 SMART sant 70 118 IPR001005 -
Stsc90754g00009 178 ProSiteProfiles Myb-like domain profile. 14 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90754g00009 Stsc-Chr90754 66240 68047 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90754g00009 19 122 MYB Transcription Factor Family AT5G17800 72.115 8.53e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc90754g00009 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90754g00009 K09422 - rcu:8261812 179.874