Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90753g00004 ATGGAGTCAAGGAGCTGCATGAACGTGGCATGCGCCACCTTCACGTCGATTCAGTGGCGGAAAGGTTGGGCCTTGCGATCCGGTGAATTAGCCGATCTCTGTGATAAGTGCGGTTCTGCATATGAGCAATCAACATTTTGTGAGATCTTCCATTCGAATGATTCTGGTTGGAGAGATTGTGTTTCATGTGGCAAGCGTCTACATTGTGGATGCATTGCCTCTATGTCTCAACTTGAGTTGCTAGATTCCGGTGGTGTAAGCTGTATAAATTGCACAAGAAATTCAGGACATCAGCATGTTGTGAGTACTGAAAGGCCTACTGGATCAGGGGCATCAAAGGTAAAGAATGTTGTTGGTGAACAGCTATGTCCATCTCTAGGTAACCAATTAAATGCAAGGGGTATGCAAGTTGGACATTACACAGATAGTGATGGGCTGAGATGGTGGCTTAAACCTCATAATCCCGATACAAATGGCCCTTCTCCCGAGATAAAAATAGAGGAAGGTTTGCCTTCCACTGCAGAACTTGGAAGCACATTGATATCACAATTTCTCTGCAAACCTAATGGATCATCTAGGGTTGCCAAATCAGATAACTGTCCGGCAGATATGGAGATGCAAGATATATATGAATCGGTGGCACATGCAAATTTGAGGTCTAGGTCTCGCCACCTTTTACCAAAGCCTCCTAGGTCAAGCCTTGGTTCAAGCTTAGAAACAAATGCAGGTATGGTGTCCCAAATCCGTGTAGCAAGGCCTCCTGCTGAGGGACGTGGAAGAAATCAGCTCCTTCCCCGTTACTGGCCTAGGATTACAGATCAAGAGTTGCAGCAAATATCAGGAGATTCAAATTCCACCATTGTGCCACTCTTTGAGAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTAGTTTTACCAAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCAGAGGGCCTTCCTCTACGAATCCAAGATGTGAAGGGAAAAGAATGGGTGTTTCAGTTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTCTAGAAGGTGTAACTCCTTGCATTCAGTCTATGCAACTGCAAGCTGGAGATACTGTAACTTTTAGCCGGATGGACCCTGAGGGGAAACTTATTATGGGGTTCAGGAAGGCAACAAATCCTGCTGCAGTACAGGAATCTCATCCATCTAATATACCCAATGGCTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTATTCTGGCCTTCTCCAGTCACAAAAGGGAAGTTCAGAATCCCCACTAAATGCGCTGTCTAAAAAATGGAATTCAGCTGGTGGTGACATGAATTGGCATAATATTGAAATACCCCAAAAAAGGACAAGAGAAGGATTGCTTTTGCCGCCTATGTTGGTTCCTGAGAAGAAAAAAACCCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCCAAGATGCACTGGAGTTGAAGCTTACATGGGAAGAGGCACAAGATTTGCTTCGTCCTCCTCCAGCTGCTAAACCAAGCATCGTGATGATTGAGGATCATGTATTTGAAGAATATGAAGAACCTCCTGTCTTTGGAAAAAGGAGTATATTCGTAGCCCGCGCTGCTGGGATAAATGAGCAGTGGACACAGTGTGATAATTGCTCAAAATGGAGGAAGTTACCAGTTGATGTACTTGTTCCCCCTAAGTGGACATGTGCTGATAACTTGTGGGATCAGAGCAGGCGTTCATGTTCTGCTCCAGACGAATTGAGCCCAAGGGAGCTGGATAATCTCTTGCGACTGATCAAGGATTTCAAGAAACAGCGAATGACTGCCAGCCAAAGACCAACCCTGGAACATGAATCTTCTGGACTGGATGCATTGGCCAATGCTGCAATTCTTGGAGATGATGCAGGTGACCCTAGTAGAACACCAGTTGCTACTACTACAAAGCACCCTCGGCATAGACCTGGTTGTTCCTGTATTGTTTGTATCCAACCACCTAGTGGGAAGGGCAAACACAAACCTACATGCACCTGTAATGTGTGCATGACAGTCAAACGCAGGTTTAAAACCCTTATGATGCGAAAGAAGAAGCGGCAATCTGAACGTGAAGCAGAGATTGCTCAGAGAAATCAGCAATCATGGGTGACCAAAGATGAATCTGAAGTAGAAAGCACCTCTCGCCATGTAACTCCAGGAGATGGTTCAGAGAATGAAGCAAGGGTGCCAAATGAGTTGGATTCAAGGAGTCAAGACCATGCGGATGATGCTGCCAAGGGACAATTAGATTTGAACTGCCAACCTGATCGTGAAGATGCTCAAGCTGGGCCGAACAGCATGAGCATGATGGGTCTACTTGAAGAAGCAAATCTGCCATTGGAGACCTACCTGAAGAAAAATGGTCTTACTAGCTTGATGTCAGAACAGCAAACAAATTCAGCCTCAAACTTGCAGCCACAGACAACCAATGACAGTGAGGGAAGACAAAAGGAGGATTGTTGTACTGCTTCTGCTGTTCAGGAGCAGGAAAGCAGTCCCGAAGAGAGCAGTGAGCAAGACAAAGGCCAAAACAATTCATGA 2625 0.4495 MESRSCMNVACATFTSIQWRKGWALRSGELADLCDKCGSAYEQSTFCEIFHSNDSGWRDCVSCGKRLHCGCIASMSQLELLDSGGVSCINCTRNSGHQHVVSTERPTGSGASKVKNVVGEQLCPSLGNQLNARGMQVGHYTDSDGLRWWLKPHNPDTNGPSPEIKIEEGLPSTAELGSTLISQFLCKPNGSSRVAKSDNCPADMEMQDIYESVAHANLRSRSRHLLPKPPRSSLGSSLETNAGMVSQIRVARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNPAAVQESHPSNIPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGSSESPLNALSKKWNSAGGDMNWHNIEIPQKRTREGLLLPPMLVPEKKKTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPAAKPSIVMIEDHVFEEYEEPPVFGKRSIFVARAAGINEQWTQCDNCSKWRKLPVDVLVPPKWTCADNLWDQSRRSCSAPDELSPRELDNLLRLIKDFKKQRMTASQRPTLEHESSGLDALANAAILGDDAGDPSRTPVATTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQQSWVTKDESEVESTSRHVTPGDGSENEARVPNELDSRSQDHADDAAKGQLDLNCQPDREDAQAGPNSMSMMGLLEEANLPLETYLKKNGLTSLMSEQQTNSASNLQPQTTNDSEGRQKEDCCTASAVQEQESSPEESSEQDKGQNNS 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90753g00004 874 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 828 - -
Stsc90753g00004 874 ProSiteProfiles B3 DNA-binding domain profile. 291 392 IPR003340 GO:0003677
Stsc90753g00004 874 MobiDBLite consensus disorder prediction 822 839 - -
Stsc90753g00004 874 Pfam B3 DNA binding domain 291 390 IPR003340 GO:0003677
Stsc90753g00004 874 Gene3D - 559 615 - -
Stsc90753g00004 874 Coils Coil 609 629 - -
Stsc90753g00004 874 MobiDBLite consensus disorder prediction 850 874 - -
Stsc90753g00004 874 Gene3D - 269 395 IPR015300 -
Stsc90753g00004 874 FunFam B3 domain-containing transcription repressor VAL1 269 396 - -
Stsc90753g00004 874 MobiDBLite consensus disorder prediction 755 771 - -
Stsc90753g00004 874 SUPERFAMILY DNA-binding pseudobarrel domain 288 390 IPR015300 -
Stsc90753g00004 874 SMART B3_2 291 391 IPR003340 GO:0003677
Stsc90753g00004 874 MobiDBLite consensus disorder prediction 649 670 - -
Stsc90753g00004 874 CDD B3_DNA 289 390 IPR003340 GO:0003677
Stsc90753g00004 874 ProSiteProfiles Zinc finger CW-type profile. 556 606 IPR011124 GO:0008270
Stsc90753g00004 874 Pfam CW-type Zinc Finger 561 603 IPR011124 GO:0008270
Stsc90753g00004 874 MobiDBLite consensus disorder prediction 822 874 - -
Stsc90753g00004 874 MobiDBLite consensus disorder prediction 708 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90753g00004 Stsc-Chr90753 19683 26340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90753g00004 1 827 B3 DNA Binding Superfamily AT4G32010 50.837 0.0 779
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc90753g00004 B3 2.2e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90753g00004 K09287 - gmx:100778833 1474.14