Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90750g00013 ATGATGGGTTCAGGTACCAATTTGGTTACCACGGTCATTGGCTTTGGGATGAGTGCCACTTTCATTGTTTTTGTGTGCACCAGAATCATTTGTGGAAGGATAAGAGGGAGTGTTGAATCTCGCATGATGTATGAGATTGAATCCAGGATTGACATAGAACAGCCAGAACATCATGGTAATGACGCCGAACCCGAGCCTGTTATGCTTGATGCCATCCCCACTTTGAAGTTCAATCAAGAGGCATTCAGTTCTATTGAAGACACACAGTGTGTCATATGTTTGGCAGATTACAGAGAAAGGGAAGTGTTGCGCATCATGCCGAAATGCGGTCACACGTTTCATCTTTCTTGCATTGACATATGGCTGAGGAAACAATCCACTTGCCCGGTATGCCGTCTGCCGTTGAAAAACTCGTCTGAGGCGAAACATGTTAGACCTGTTACATTTACCATGAGCCAGCCTCTTGACGAGTCGCACACAGCGGAAAGGAATCAAGATAGTGAGAGTCACGTCGAACCCACCTCTAGCAACTCCTCACAACCACCAACTCCTGGTGAACCAGAAGCAAGACAATGA 576 0.4635 MMGSGTNLVTTVIGFGMSATFIVFVCTRIICGRIRGSVESRMMYEIESRIDIEQPEHHGNDAEPEPVMLDAIPTLKFNQEAFSSIEDTQCVICLADYREREVLRIMPKCGHTFHLSCIDIWLRKQSTCPVCRLPLKNSSEAKHVRPVTFTMSQPLDESHTAERNQDSESHVEPTSSNSSQPPTPGEPEARQ 191
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc90750g00013 191 MobiDBLite consensus disorder prediction 144 158 - -
Stsc90750g00013 191 Pfam Ring finger domain 89 132 IPR001841 -
Stsc90750g00013 191 PANTHER OS11G0150450 PROTEIN 1 175 - -
Stsc90750g00013 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 142 IPR013083 -
Stsc90750g00013 191 MobiDBLite consensus disorder prediction 144 191 - -
Stsc90750g00013 191 MobiDBLite consensus disorder prediction 170 185 - -
Stsc90750g00013 191 SUPERFAMILY RING/U-box 80 138 - -
Stsc90750g00013 191 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Stsc90750g00013 191 SMART ring_2 90 131 IPR001841 -
Stsc90750g00013 191 CDD RING-H2_EL5-like 89 132 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc90750g00013 Stsc-Chr90750 93040 95147 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90750g00013 79 180 C3H Transcription Factor Family AT4G10160 38.462 8.55e-20 81.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90750g00013 - - ccaj:109802319 343.199