Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90750g00010 ATGGGTCTTGGTGGCAATTTCTGGGAGCTACTAAAGCCCTATTCACGGAGCGAAGGGTTTGATTTCTTGAGGAACAAGCGAGTTGCTGTGGACCTCTCTTACTGGATTGTGGCTCACGAGACTGCCTTAAAGGCTCATCATGTTCGGAAACCCCACCTCAGGCTCACCTTCTTCCGCACCATCAATCTCTTCTCCAAGTTTGGAGCATTTCCAGTGTTTGTCGTTGATGGAACTCCATCGCCGTTGAAATCAGAGGCCCGGATTGCGAGATTTTTCCGGTCTTCCGGCATTGAATTAACTAGCTTGCCAGTGCCTGAAGGAGGTGTCTCAGCTGAGAGGAACAGTGCTTTTACAAAATGTGTTCAAGAATGTGTGGAACTTCTTGAGCTACTTGGAATGCCTGTATTAAAGGCTAAAGGAGAGGCTGAAGCACTTTGCGCCCAATTAAATTCAGAAGGCCATGTAGATGCTTGCATCACAGTTGACAGTGATGCATTTCTCTTTGGGGCCAGATGTATAATAAAAGGCTTTTGCCCCAATTCCAAAGAACCATTTGAGAGCTACAATATGTCTGATATTGAAGCTGGCCTTGGGTTGAAGAGGAAACACTTAATAGCTCTTGCTCTTCTGGTTGGAAATGATCATGATATGAATGGTGTTCGAGGGATCGGACTTGAGACTGCTCTTCAGTTTGTTCGAGCTTTTAGTGAAGATGATATATTAAATAGATTACACGAGATAGGCAAAGGAAACACTACTCAAGTTCTTATAAGCATTAAATCTGGGGACAATATTGACACGGATGAGAACTCCCCGAAAAAACAACCTCACTGCTCATTCTGTGGGCATCCTGGCAGCAAAAGGGATCACATGAAGTTTTCCTGTAAATATTGTCTCACTGATGACGAAGAAAGTTGTCTGAGTAAACCGGAGGGTTTCAAATGTGAATGTGTCTCTTGTGATATGAACAGGAAACATAAGGAGCAGAAAAGGCTTGAAAATTGGCACACAAAAGTTTGCGACAAGATTGCAAATGAACCAAATTTTCCAAAGGATGAAATCATTGATATGTATCTATGTAAAGACAACGGTTACTTCTCCGAAAAGGATGGCCCTTGCATGTCTTGGGGAAAACCTAATATTGAGATGCTGATTGATTTCTTAAACTTCCATCAGAACTGGGACCCATCCTACGTTCGGCGGCTGATCTTTCCCGTTATGTCCACCATCTTCTTGAGAGATATCACTACTACTACAGGAGAAGATTTGTTATTTGGACAGTATGAGTTTGATTCGTTGGAACGGGTGAAGACAAGATATGGATATCAGTTTTATGTGGTCAAGTGGAAACGAGCATTTAACAACAACGTTGCCTATAGAATTCCATCAAATGTACCTGACACGCCCCAACAAGGTACAAGAGAACTGGATGAAACGGTGGATTCACTAGACGACTGTGATGTTCCTGAGGTTCTCATGGATGAGGGCTCGAGTTTTCTATTGACGGATGAAAATATGGACCTTGTAGCAGCTGCTTTTCCGAAAGAAGTGAAAAAGTTTTGGCACGAACAGGAACTGAAGGAGTTGAAAAAAAGAAAGAGCCCATCTTCTAGATCAGATAAAAATGAAAAATCAGTATCACCAAGCTCAAAGAGGTTGCAGCTAAACATCACAGAATTCTTCCCTTCAGCAAAAGTTAAGAATCAATCAAAAGCAGACGACTCATCCAAGGATATCGGTGATAGCCAAGGTAGTGGAGACTCAAAAGGGAAGAGGAAAGAATCAAGTTCTAACCTCCCGAAATCCGTGCGGCGCCGCCTTCTATTTGACTAG 1833 0.4283 MGLGGNFWELLKPYSRSEGFDFLRNKRVAVDLSYWIVAHETALKAHHVRKPHLRLTFFRTINLFSKFGAFPVFVVDGTPSPLKSEARIARFFRSSGIELTSLPVPEGGVSAERNSAFTKCVQECVELLELLGMPVLKAKGEAEALCAQLNSEGHVDACITVDSDAFLFGARCIIKGFCPNSKEPFESYNMSDIEAGLGLKRKHLIALALLVGNDHDMNGVRGIGLETALQFVRAFSEDDILNRLHEIGKGNTTQVLISIKSGDNIDTDENSPKKQPHCSFCGHPGSKRDHMKFSCKYCLTDDEESCLSKPEGFKCECVSCDMNRKHKEQKRLENWHTKVCDKIANEPNFPKDEIIDMYLCKDNGYFSEKDGPCMSWGKPNIEMLIDFLNFHQNWDPSYVRRLIFPVMSTIFLRDITTTTGEDLLFGQYEFDSLERVKTRYGYQFYVVKWKRAFNNNVAYRIPSNVPDTPQQGTRELDETVDSLDDCDVPEVLMDEGSSFLLTDENMDLVAAAFPKEVKKFWHEQELKELKKRKSPSSRSDKNEKSVSPSSKRLQLNITEFFPSAKVKNQSKADDSSKDIGDSQGSGDSKGKRKESSSNLPKSVRRRLLFD 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90750g00010 610 SMART xpgn3 1 97 IPR006085 GO:0004518
Stsc90750g00010 610 MobiDBLite consensus disorder prediction 528 547 - -
Stsc90750g00010 610 MobiDBLite consensus disorder prediction 570 600 - -
Stsc90750g00010 610 SUPERFAMILY PIN domain-like 6 214 IPR029060 -
Stsc90750g00010 610 MobiDBLite consensus disorder prediction 548 569 - -
Stsc90750g00010 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Stsc90750g00010 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 204 219 IPR006084 -
Stsc90750g00010 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Stsc90750g00010 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 128 145 IPR006084 -
Stsc90750g00010 610 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 149 169 IPR006084 -
Stsc90750g00010 610 Gene3D - 199 261 - -
Stsc90750g00010 610 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 8 552 IPR006084 -
Stsc90750g00010 610 FunFam Flap endonuclease GEN-like 1 199 256 - -
Stsc90750g00010 610 Pfam XPG I-region 132 214 IPR006086 GO:0004518
Stsc90750g00010 610 Gene3D - 5 198 - -
Stsc90750g00010 610 SMART xpgineu 129 199 IPR006086 GO:0004518
Stsc90750g00010 610 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 199 413 IPR036279 -
Stsc90750g00010 610 CDD PIN_GEN1 5 203 - -
Stsc90750g00010 610 MobiDBLite consensus disorder prediction 528 610 - -
Stsc90750g00010 610 FunFam Flap endonuclease GEN-like 1 2 198 - -
Stsc90750g00010 610 Pfam XPG N-terminal domain 1 90 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90750g00010 Stsc-Chr90750 82014 85712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90750g00010 16 246 Core DNA Replication Machinery Family AT5G26680 29.880 1.02e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90750g00010 K15338 - gmx:100791251 895.575