Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90749g00009 ATGTCAGAAATCTGCAGCACCAATTTTCATGAACTAACTGCACCTGAAGAACTTGAAGCAGACCATTATTACCACCAATATAACGATGAAAGTTTCTTGTTTCCAAACAACTTCTTTCTTGATCCTTATTTTGACATTAACACTGGCTTTCTCCAACCTAATATCTTCTCTTCTAATCAACCTCAATCTAGTTGCACTTCTTCTTATGATCCCTTTATCACGCTTAATGGTACCGAATCCTCCAATGTCAACACCCTTCCTTCATGTCAGAAACGACAGAAGTACTTCCATGAAGAGCAAGAACTTGAACACCCTCCTCTCCTTGAGCAGCTTGCACCACCAAATTTTCTTGATGGGTTTGTAGCGAACCCATCATCCTTACTACCATCAGAAGAAGGAGCATTAGCAGAAGAACTACTATTACCCGCAACAATACCATCATCAACGGAATTCATGGTTCCAGAACTTGCACAAGGTGGTTTCTGTGTGGGAGTTAATGTTGAAAGTGAGAAGAAGTGCAGTGAAAGAACTATCTCAGCACAGAGCATAGCGGCGAGGGAAAGGAGGAGGAAGATCACAGAGAAGACACAAGAGCTTGGGAAGTTGGTTCCTGGTGGACCCAAGATGAACACAGCTGAGATGCTTCATGCAGCTTTCAAATATGTGAAGTACCTTCAAGCTCAAGCTAGTATGCTTCAGCTTATGAACACACTTCAGGAAGATGAGGTTGCTCCTCCAAGTGAAGATCTATGCACTCTTGTTGCTTCTCCATTTGTTCAAGAGAAGCTTTATTCTGAGGAACTATGCATTGTTCCTAAAGAGTTTGTTTCAACTTTGACAAGTCAACGTGATGTTCGAACAAAGCCAACCATCCTTAAAGATCTTGAACAGTTGATTGAGACAAACAATGGGAAGAAGAAAGCATAG 927 0.4153 MSEICSTNFHELTAPEELEADHYYHQYNDESFLFPNNFFLDPYFDINTGFLQPNIFSSNQPQSSCTSSYDPFITLNGTESSNVNTLPSCQKRQKYFHEEQELEHPPLLEQLAPPNFLDGFVANPSSLLPSEEGALAEELLLPATIPSSTEFMVPELAQGGFCVGVNVESEKKCSERTISAQSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLHAAFKYVKYLQAQASMLQLMNTLQEDEVAPPSEDLCTLVASPFVQEKLYSEELCIVPKEFVSTLTSQRDVRTKPTILKDLEQLIETNNGKKKA 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90749g00009 308 CDD bHLH_AtbHLH_like 181 233 IPR045239 -
Stsc90749g00009 308 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 225 IPR011598 GO:0046983
Stsc90749g00009 308 Gene3D - 175 244 IPR036638 GO:0046983
Stsc90749g00009 308 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 178 272 IPR045843 GO:0003700|GO:0006355
Stsc90749g00009 308 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 238 IPR036638 GO:0046983
Stsc90749g00009 308 Pfam Helix-loop-helix DNA-binding domain 182 226 IPR011598 GO:0046983
Stsc90749g00009 308 SMART finulus 182 231 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90749g00009 Stsc-Chr90749 69574 72298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90749g00009 86 302 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 41.071 7.75e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc90749g00009 HLH 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90749g00009 - - aip:107610272 390.193