Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90745g00004 ATGGCAGTGGAGAATCCTCCTTTGATCATAAAGCTTAAGACTTCATCCAAACGAAAGCTTGACGTCAATGAACGTGTTGAGGTGAGGAGCATGGAGAATGGCTTTCAGGGCTCATGGCACCCGGGGAAAGTTGTCGATTCTGGGAGGCTGTATCGGCATGTCAAATATGATAACATATTAGCTGATGATGTGGTGAATTACCTTGAGGAAAAGGTGAATGTTCCGAAGGTGTTGGATGGTGATAGCGATTCTTCAAATTACAACTTTCGTGGTTGGATTAGGCCATTGCCTCCTAAGAGGGAATTTGAAGTTAGGGAAGTTAAATTTGGTCTGTGTGTCGACGTGTACCATGAGGAAGCTTGGTGGGAAGGGGTTATCTTTGATCACCGTGATGGAATGGAAGAGAGAAGTGTATTGTTTCCGGATTTGGGTGATGAGATGAAGATTGGAGTTCATCAAATGCGGATAACTTATGATTGGGATGAGGTTACCGGGAAGTGGCGGCGGAGAGGGAACTGGGTTCTTCTTGAATTGATTGAGCAGTACCGGAGGACATCGTTTGTTTCAGTTTCAGTGAAGCAAGTTTGGTATGATGTAAGGACCAAAAAGGACTTCGCCAAGATTAGGGAATGGACTTTTAATGAGAAGAAATTATGGAAAGACATGGTAATGGAGATACTTGGTGACTACTTAAGTCTTACATTAGGCGAAGTTTGCTCCTCCTTAGACCTTCCAAGGAGTTTATTTAATGAAACACCGGAGAAGGAGTTAGTTGAACCTAGAACTAATGTCGAATTCAATCAGGAAGTTGATATGGCCAACTCCTTCGATGTTGCAAACTCTGCTGACCAATTGAGTAGCAATTGTATCACAACTTCTCATTGTGATGGTACGCCTGATACTGCATTTAGTTCTGATGATAGGATTGCTGAACTCCCTATGGAAGAAGGTGAGTCATCTAATTTGTTGAACGCTATTCGAAACAGCCCTGCCATCGAATCTGTCCCTCGGAGAGAAGTTTCGGTTCAGAAAGAACCTCTTGTTCCTTTTCAAGAGTTCTCAACTCAATTTCACAGGGAAACACCCTGCCATGTTGCTACTGAAGTAATTGTTTATGGAAGCTGCTTAGAAAAACGTAGAAAGCGTCACTGCTCAATTGTTTGGGAACCTCTAAAATTTTCTGAAGTTGAGTCATGTCCTGATGCTGTTGAACAATATGCAAAATCTGCTAAGAATGTTTGTCTGGAAAAAGTACGAAAACATCTTGTGTATCTTGGATGGGAAATCGAGTGGACAAGGCGTAAAGACAAATTATACAGGTACAGGTATAGGTCTCCTGATAAACAGGGTATTTACTACTACTCTCTCAGTTGTGTTTGTAAAGATGTTGCACAGGGCTCGGACAGGAACCCTTTGCCGCCTTTGCCGTCCCCAAACGATCAGAGTATGATGCAACTTACAACTGACAGTCATCCTGCACCTATTCTAATTGATCAATCCGAAAAAAGTGAGGATCTAAACATTTTGCCTCCGGTTGTGTCGTCTCTGCCGGCCGAAAATGCAGATGAACCTGAGTTTTGCCCTGAAGCCGTTTTAGAATATAGTATGAAGAGATTTTCACTGCGAGGGGCTGCCTTGACAGCATGTAAGTCCAAAGCAAAGAGGCATCTTTTGGCTGAAGGATGGAGCTATCAGTATATAGACCCAAGTAATAAAAGAAGGGGGTTTTTGTATACTCCTCCAGACAAGGGAAGAATTGTAAATACACTCCATGCAGCATGCCGTTATTCTATTGAACAAAATGTTTCTAAATGGAGCATGCTTGGAATGCAACCTCTGAATGCGAAGGATAATGTTGAGCAGATTTGGAGTTCCAATTTGTTGCAGAAAGCATCTCAATGGCTTCGAGAAGAACCTGAGGTAGGTGCCACAAAAGGTGAAGCTTCAAGTGGATCAACCCATAATCGGAAGCGGAAACTCTTGGAAAACACAAAGCCCAGCTTGTCTAAGCACCAAAGCAATGGAGTACCTCGACGGGTACTACGATCAAGTAAAAGGGTGCAAAAGGCGTCTGTCCCTTCTTTGTCACACCAGAAACCTCAGAATGTAGTGTCTTGGTTGATAGACAACAACATTCTGTTGCCAAGGTCTAAGGTTTCTTATAAGCCAAAAGGCAGGCACAGTTCAGCTCAAGGGAGAATAACCAATGATGGAATCAAGTGTAACTGCTGTCTTAAAGTATATAGTCTTTCTGGCTTTGAAAGTCATGCTAGTGGCTGTAGTACCCGCAGACCTGCTGCGAATATCATTCTAGAAGACGGTAGATCACTATTAGATTGCATGATAAAAACAGTGGAAGATCATATGAAAAGGGAAGCTATGGCAAAACCAACCAAAGCTTTTCGTCAAGGCGAGAATGACAATGTTTGTTCTGTTTGCCACTATGGCGGCGATCTAATCTTATGTGATCAATGCCCATCTTCATTTCATGGGATATGTGTAGGTCTGGAGGACGTCCCTGACGGTGAATGGTTTTGCCCATCATGTCGATGTGCAGTTTGTGGCGAAAGTAAAATAGAAGAAGAGGAGGAAGATTTCCTTGTTTGTGCTCAGTGTGAACATAAATATCATATTAGGTGCCTTGAAGATAAAGATGCAACTAACTCGAGAAGATATAATAAGAACTGGTTCTGTGGAAGGGACTGTGAAAAGATACATGTAGGTCTCCATAAGCTACTAGGAGAGCCAGTTTCAGTGGGCAATAACAATCTAACTTGGACACTGGTGAAATATATAAACTCTGAGAGTAGAGATCAGTGTGCTTTTGACGGTTACTTATTGCCAGAAAGTTACAGCAAACTCAACGTTGCACTCTCAGTGATGCATGAATGTTTTGAGCCTGTAAAGGATCCTTTGTCTAGAAGAGATCTCATGGAAGAGGTTTTATTCAGTAGAAGGTCAAAGCTTAATCGATTGAATTTCCATGGTTTCTATACCGTGCTTCTGGAGAGAAATGAAGAACTGATAAGTGCAGCAACTATTAGGGTCTATGGAAGGAAGGTAGCAGAAGTGCCTCTTGTTGGTACCAGATTACAGTATCGCCGACATGGAATGTGCCGAATTTTGATGAATGAACTTGAAAAGAGGCTTATGCAACTGGGAGTGGAGAGGCTCATTTTACCTGCTGTTCCTAGTGTTGTAGAAACATGGACTGGTTCTTTTGGCTTTGCAAGGATGACAGAGTTTGAGAGATCACATTTCTTGGACAACACCTTTTTAGATTTTCAGGGTACCATCATGTGCCAGAAGCCGTTGACAAAGAATCCATCTCCGGATTCGGTTATGTTAATAGAGCCCCAACAAACTACACAGGATGTTTTGCCTGGAACTAAGTTAAAGTTTGATGCTGGTTCGGTTTCTGAAGTATTACACCAAGCAGGAGAAACTGACAAAGGAGAGACACAGAATTTACAAATGCAAGATACTCTTGGTAGCAGCAATGATAATTGCAGTAATGGTGTCATTGGGCAATTCACACTGGTGAATAAACCAAGTCCTGAGGATCATCAGTGCCAGAGCTCCATTGTAACACAAGCTGACAGTAACAATGATTCATCATCATATCAGTTATACTACAAAAGGAGGAGATATTCAAAGTCATAG 3663 0.4218 MAVENPPLIIKLKTSSKRKLDVNERVEVRSMENGFQGSWHPGKVVDSGRLYRHVKYDNILADDVVNYLEEKVNVPKVLDGDSDSSNYNFRGWIRPLPPKREFEVREVKFGLCVDVYHEEAWWEGVIFDHRDGMEERSVLFPDLGDEMKIGVHQMRITYDWDEVTGKWRRRGNWVLLELIEQYRRTSFVSVSVKQVWYDVRTKKDFAKIREWTFNEKKLWKDMVMEILGDYLSLTLGEVCSSLDLPRSLFNETPEKELVEPRTNVEFNQEVDMANSFDVANSADQLSSNCITTSHCDGTPDTAFSSDDRIAELPMEEGESSNLLNAIRNSPAIESVPRREVSVQKEPLVPFQEFSTQFHRETPCHVATEVIVYGSCLEKRRKRHCSIVWEPLKFSEVESCPDAVEQYAKSAKNVCLEKVRKHLVYLGWEIEWTRRKDKLYRYRYRSPDKQGIYYYSLSCVCKDVAQGSDRNPLPPLPSPNDQSMMQLTTDSHPAPILIDQSEKSEDLNILPPVVSSLPAENADEPEFCPEAVLEYSMKRFSLRGAALTACKSKAKRHLLAEGWSYQYIDPSNKRRGFLYTPPDKGRIVNTLHAACRYSIEQNVSKWSMLGMQPLNAKDNVEQIWSSNLLQKASQWLREEPEVGATKGEASSGSTHNRKRKLLENTKPSLSKHQSNGVPRRVLRSSKRVQKASVPSLSHQKPQNVVSWLIDNNILLPRSKVSYKPKGRHSSAQGRITNDGIKCNCCLKVYSLSGFESHASGCSTRRPAANIILEDGRSLLDCMIKTVEDHMKREAMAKPTKAFRQGENDNVCSVCHYGGDLILCDQCPSSFHGICVGLEDVPDGEWFCPSCRCAVCGESKIEEEEEDFLVCAQCEHKYHIRCLEDKDATNSRRYNKNWFCGRDCEKIHVGLHKLLGEPVSVGNNNLTWTLVKYINSESRDQCAFDGYLLPESYSKLNVALSVMHECFEPVKDPLSRRDLMEEVLFSRRSKLNRLNFHGFYTVLLERNEELISAATIRVYGRKVAEVPLVGTRLQYRRHGMCRILMNELEKRLMQLGVERLILPAVPSVVETWTGSFGFARMTEFERSHFLDNTFLDFQGTIMCQKPLTKNPSPDSVMLIEPQQTTQDVLPGTKLKFDAGSVSEVLHQAGETDKGETQNLQMQDTLGSSNDNCSNGVIGQFTLVNKPSPEDHQCQSSIVTQADSNNDSSSYQLYYKRRRYSKS 1220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90745g00004 1220 CDD Tudor_Agenet_AtDUF_rpt1_3 22 98 - -
Stsc90745g00004 1220 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 960 1106 IPR000182 GO:0016747
Stsc90745g00004 1220 Pfam Tify domain binding domain 732 783 IPR032308 -
Stsc90745g00004 1220 ProSiteProfiles Zinc finger PHD-type profile. 807 852 IPR019787 -
Stsc90745g00004 1220 SMART PHD_3 851 902 IPR001965 -
Stsc90745g00004 1220 SMART PHD_3 809 850 IPR001965 -
Stsc90745g00004 1220 MobiDBLite consensus disorder prediction 651 665 - -
Stsc90745g00004 1220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 852 905 IPR013083 -
Stsc90745g00004 1220 SMART agenet_At_2 18 78 IPR014002 -
Stsc90745g00004 1220 SMART agenet_At_2 105 162 IPR014002 -
Stsc90745g00004 1220 PANTHER PHD FINGER PROTEIN 12 536 1179 IPR042163 GO:0003714|GO:0045892
Stsc90745g00004 1220 MobiDBLite consensus disorder prediction 638 696 - -
Stsc90745g00004 1220 Gene3D - 949 1081 - -
Stsc90745g00004 1220 Pfam Agenet domain 24 98 IPR008395 -
Stsc90745g00004 1220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 800 851 IPR013083 -
Stsc90745g00004 1220 Pfam PHD-finger 810 851 IPR019787 -
Stsc90745g00004 1220 SUPERFAMILY FYVE/PHD zinc finger 785 850 IPR011011 -
Stsc90745g00004 1220 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 981 1085 IPR016181 -
Stsc90745g00004 1220 SUPERFAMILY FYVE/PHD zinc finger 851 900 IPR011011 -
Stsc90745g00004 1220 CDD NAT_SF 1000 1060 - -
Stsc90745g00004 1220 SMART ring_2 851 943 IPR001841 -
Stsc90745g00004 1220 SMART ring_2 810 849 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90745g00004 Stsc-Chr90745 44047 49934 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90745g00004 29 478 PHD Transcription Factor Family AT5G58610 31.648 1.26e-62 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Stsc90745g00004 Agenet 1.3e-13 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90745g00004 - - aip:107644722 1838.16