Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90744g00004 ATGAAGACCCAAAGAAAGAGTGAACAATTATCCTTAGAGAGTAGAAAGTATGAGAATTTTAGGTTAGCTTATGTTTGTGCTAGTGCTGGATCAAGGGTGATTGAGATAGTTGACCATCCAGAAGAGATTGTTGTACATTACTTACATAGCTATTTTCTTCTTGATTTATTTGTAGTGATTCCTCTACCTCAGATAATTATATTGTTTGTGCTACCAAAGTACTTGGGTTCATCAGGAGCAAATCATTCAAAGAATCTTATATCTGCAGTGATCCTTGTGCAATACATCCCCAGATTATTCAGGTTTTTGCCGTTGCTAATTGGCCAATCTCCAGCAGGAATCATATTTGAGTCAGCGTGGGCAAGTTGTACTGTGAATCTTCTCATTTTTGTGCTTTCTGGCCATATTGTTGGCTCTTGCTGGTATCTCTTTGGTCTACAGAGAGTTAATCAATGTTTGCTAGAGGCTTGCCATAACGCTAAGATTATTGGTTGCATGAAATATGTGGATTGTGGACATGGACATTCCTCTTACCAGACATCTGATTTGTGGAAAAACAATGTAAATGCCACAGATTGTTTGAATTCCTCGTCTGGTGCTTTTGATTATGGGATCTATGCCGATGTTGTTCGACTTACTACAGGAACCAACATGGTCAGAAAATATTTGTATTCACTCTTTTGGGGCTTCCAGCAAATCAGTACTCTTGCTGGTAATCTAACCCCAAGTGATTTTGAGTTCGAAGTCCTTTTCACAATGGTAATCATAGGACTGGGGCTCTTGCTTTTTGCGCTTCTCATTGGAAACATACAAAACTTTCTGCAAGGTCTTGGACAAAGGACACTAGAAATGCAAATTAGAAGCCGTGAAGTTGAGCAATGGATGAACCAATTTCACTTACCAGAAGATCTAAGAAAGAGAATCAGACATGCTGAAAGGTATCATTGGGTCGCAACAATAGCCATGAATGCACAAATGCTTATGGAGAATATGCCAGAAGATCTGCAGAGAGACATAAGACGTCATCTCTTTGAATTTATTAAGAAAATTCGAATTTTTAGCTTAATGGATGAGCCTATTTTAGACGCCATTTGTGAGAGGCTCAGGCAAAAAGTATACTTCAAAGGAAGTACTGTTTTGCATCCTGGTGATTTGGTAGAAAAAATGTTCTTTGTTTTGCGTGGAGAATTGAAGAGCATCGGTGAAGATGGAACTAGAGTTTTGTTAACCGAAAGGGATGCTTGTGGTGAAGAACTTTTAATATGGTGTCTTGAAAATTCTTCGGTCAGCACAGATGGTAAAAAGGCATGGCTTCCTGGACCAAGGTTGCTTAGTAGAAGGACAGTAACGTGCTTAACAAATGTGGAGGTATATTCAATTGGAGCTGCTGACCTGGAAGCAATTACAATCCGTTTCACAAGATTTTTGCGGAATCCAACCGTTCAAAGAGCATTGAGGTACCAATCACTGTATTTGAGATCCGTCGCGGCAACCAGGATTCAGGTTCAATGGAGATGGTATAGGGAGAGAAAACTAAAACGTGCTACCTCACGTGCAAATTACTACTAA 1569 0.3952 MKTQRKSEQLSLESRKYENFRLAYVCASAGSRVIEIVDHPEEIVVHYLHSYFLLDLFVVIPLPQIIILFVLPKYLGSSGANHSKNLISAVILVQYIPRLFRFLPLLIGQSPAGIIFESAWASCTVNLLIFVLSGHIVGSCWYLFGLQRVNQCLLEACHNAKIIGCMKYVDCGHGHSSYQTSDLWKNNVNATDCLNSSSGAFDYGIYADVVRLTTGTNMVRKYLYSLFWGFQQISTLAGNLTPSDFEFEVLFTMVIIGLGLLLFALLIGNIQNFLQGLGQRTLEMQIRSREVEQWMNQFHLPEDLRKRIRHAERYHWVATIAMNAQMLMENMPEDLQRDIRRHLFEFIKKIRIFSLMDEPILDAICERLRQKVYFKGSTVLHPGDLVEKMFFVLRGELKSIGEDGTRVLLTERDACGEELLIWCLENSSVSTDGKKAWLPGPRLLSRRTVTCLTNVEVYSIGAADLEAITIRFTRFLRNPTVQRALRYQSLYLRSVAATRIQVQWRWYRERKLKRATSRANYY 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90744g00004 522 Gene3D - 16 276 - -
Stsc90744g00004 522 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 19 515 - -
Stsc90744g00004 522 SUPERFAMILY cAMP-binding domain-like 279 476 IPR018490 -
Stsc90744g00004 522 CDD CAP_ED 352 485 IPR000595 -
Stsc90744g00004 522 ProSiteProfiles cAMP/cGMP binding motif profile. 352 431 IPR000595 -
Stsc90744g00004 522 Gene3D Helix hairpin bin 281 344 - -
Stsc90744g00004 522 Pfam Ion transport protein 43 281 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc90744g00004 522 ProSiteProfiles IQ motif profile. 493 521 IPR000048 GO:0005515
Stsc90744g00004 522 SMART cnmp_10 352 487 IPR000595 -
Stsc90744g00004 522 Gene3D Jelly Rolls 350 474 IPR014710 -
Stsc90744g00004 522 SUPERFAMILY Voltage-gated potassium channels 42 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90744g00004 Stsc-Chr90744 33402 42133 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90744g00004 20 430 Ion Channels AT3G17700 61.111 9.09e-172 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90744g00004 K05391 - gmx:100781973 677.552