Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90743g00011 ATGGGGATTGTTTTGGATAGCAGCTGCGAATCAATACTGCTCTCGCTCGAGACACAGAAGGCGGTGCCGGCGCCCTTCCTCACCAAGACCTACGAGCTGGTAGACGACGGCGCCACCGATCACATAGTTTCGTGGGGAGAAGACAACACCACCTTCGTCGTTTGGCGTCCTCCTGAGTTCGCCAGAGACCTTCTTCCAAACTACTTCAAACACAATAACTTCTCCAGCTTCGTTCGCCAACTCAACACTTATGGTTTCAGAAAGATTGTACCTGATAGATGGGAATTTGCAAACGAGTTCTTCAAGAAAGGGGAGAAGCATTTATTATGTGAGATTCATAGAAGAAAAACATCACATCCACATCAACATCAACCATCATCCATCACCATGATGAACCACCATGACCAAAACAATAATAATCCACACTTTTCTCCAATGGGATTTAGCAACATTATTATGCCCTCCACTACATTTTACCCTTTTCAGCAGCACAATAACAACAACAACAACCGAGTTAGCATCTCCCCTGACTCGGACGAGTTACCTACTTGGTGTGACTCGGACATTATTAGCAACACTTGCTCATCAACAACGGTTTCAGCACTCGCTGAAGACAACGAAAGATTAAGGAGAAGCAACAACATCTTAATGTCCGAATTAGCACACATGAAGAAGCTCTACAATGACATAATCTACTTTGTTCAGAATCATGTTAAGCCTGTCACACCAAGCAACACTTTTCTTCTTCCATATCAACAAGCTTCAACTAATTGCAACGGTTTCTCATTAGCGTCGCAAAAGCCAATGAACCAGTTTTTCAATAATAAGCAAGTAGTGCAAGACCAACAACACCATGATTATTTGAACTCTCCAACAAACACATCAAGGAGTTCTATAACAATGGTTGAAGATCAGCAAAGTAAGAGTAGTAGTTGCAAGACCAAGCTTTTTGGAGTGTCTCTTCAATCCAATAAGAAAAGGGTACACCCTGAGTACGGATTTAGCCACGGTTTTGTGGAAACAAGCAAGGCTCATCGTTTGGTGTTGGGAAACAACAACAATGACAATGATGATTATTTGGGATTGAATCTCATGCCTCCTTCTTATAATTAA 1113 0.4223 MGIVLDSSCESILLSLETQKAVPAPFLTKTYELVDDGATDHIVSWGEDNTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTSHPHQHQPSSITMMNHHDQNNNNPHFSPMGFSNIIMPSTTFYPFQQHNNNNNNRVSISPDSDELPTWCDSDIISNTCSSTTVSALAEDNERLRRSNNILMSELAHMKKLYNDIIYFVQNHVKPVTPSNTFLLPYQQASTNCNGFSLASQKPMNQFFNNKQVVQDQQHHDYLNSPTNTSRSSITMVEDQQSKSSSCKTKLFGVSLQSNKKRVHPEYGFSHGFVETSKAHRLVLGNNNNDNDDYLGLNLMPPSYN 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90743g00011 370 FunFam Heat stress transcription factor B-4 18 116 - -
Stsc90743g00011 370 Gene3D - 18 117 IPR036388 -
Stsc90743g00011 370 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90743g00011 370 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90743g00011 370 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90743g00011 370 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90743g00011 370 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Stsc90743g00011 370 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc90743g00011 370 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 295 IPR027725 -
Stsc90743g00011 370 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90743g00011 Stsc-Chr90743 73752 75702 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90743g00011 10 365 HSF AT1G46264 54.424 1.59e-113 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc90743g00011 HSF_DNA-bind 1.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90743g00011 K09419 - gmx:100781389 415.231