Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90741g00014 ATGGATAATAACCGGTTTTCATCACAGAAATACACAGCCAAGAGTGGTTATGAACCCTCAGACACAGAGACAGAGTGGCAAGATGTTCCAAGACATGAACGAGAAAGAAAGAACATTGCATTGGATCATCAAGATGCAAAAGCTTTCAATCTAATTTCCAAGAGTCCATTGGCACTACACAGGAGGCACCAATACAACCATTCCAAGTTTGAAACTGAAATCTCATCACCAAGCCAACCACGAAGAAGACAACACCTTAGCAAGTCACCCTATAAGCTTCGCATAGCTGGCGATGGCGACTGCGGCGATACTGATGATCATCTTCCCTCTCCATCACCAATAAGAGGTTTGAACACAAGGAGGAATATTAGCCCTTTGCCAAAACCAGATGGTGGGAGAACCGTGTCTCCTTACAGCAGAAAGCATCATGTTGATGTGGAAAGAGTGGTTGATAAGCAAAACTATAAAAGATCAGTGACAGCACCAAGGTTGAGGGAACAACAGAGAAGAACTCCCTCACCAATGGCCAGAGGCAGGGTTCTCAATCCACCTTCAGTGGGAGAGATCAATGAAATCATAGCTGAGGTGAAACTATCCGATGACCCTAACACTTTGGATGAGTCAATGATTTCCACCACTGAGTCTATTCAACCTGGTGATCTTTTCTTCTCCCGCGAAAGCAGTGCCTTGCAAGGCAAGAAACCTTCTCTGCTGCCCCAGAAACTTCAACAATATGGATATTATAGCCCAAGTCCTGCAGCAGCTGCCATGAATCCCCACATTAGAGGTCTCCCTGCTTCTTCCCTTGAGGATGAAAGCAACGGAGATGGCATGAACATGCGAGGAATGTCTAGATCGAGTTCAGCTGTTACAAGCAGAAAGGGTGGTAGCAGTATGGCGAGCGATGGAAGTGTGAAGACAACTGATAGCATGAGGAAATTTACATCTAACAGGAAGAAGAGCCAGAAGGATGCATCATGGTTTTCTTGCATGAGGACAGGAAACTGCAGGACTTCGATGAAATCGCCAGAGCGTAAAAGGCCAATTGAGGCTTCTTTCATTGGCAGGGCTATTGTGGTGGAAACCCTCCCACAATTCTGGGCTGATAAGCACCAACCTGCTTCACTTAATGGCTTCATTTGCAACAAACAAGAAGCTCAACTTCTCAAGGAATTAATGTCTGAGGGCTCTTGCCCTCATATTCTGCTCAAAGGACCCTCCGGTTCTGGGAAAAGAGAACTAGCAATGACTCTTCTACGCGAAATATATGGTGATGCATGTTGCAATATGTCCCATGAGTTAAGGAGCTTCCCTATTCAGGACAAGAGGCCTATCAAAGTATGTGTTTCAATACCATCTAGTGCCCATCACATGGAGCTCAATGTAAGCATGGAACCAAATGCTAAATATGCTTTGCTGGGATTAATCAAAGAAATTAGCAATATTTATGCAATGACACCTGAAGTCAGCAATGTTAATTTCAAGCCTGATTATAAAGTAATAGTTCTTTATGGAGTTGATAAAGCAGTGGAGAACATCCAGCACATGATCAAATGGATTATAGACCGATATTCGGATATATGCAAACTAGTCCTATGCTGTGAAGATGATGCATCAATTGTTGAACCTGTTAAAAACCGTTTCAAAATTATCAAAGTTGATGCTCCTCAAACTCACCAAATTGCTGAGGTTCTTATTCAGATAGCAAAGAAAGAGGAAATTGATGTATCCCATAATTTTGCCGCAAAGATTGCCATAAAATCAAGGCAAAACCTGAGGAAAGCTATCATGGCGCTCGAAGCTTGCAAGGCGCACAACTATCCATTTTCAGAAGAACAACCGGTTCCAATTGGATGGGAGGACATGGTGATAGAAGTAGCTGCAGAGATTCTAGCTGATCCATCATTTTCTCGGTTAATGTCAATAAGAGGAAAATTTCAGATGCTTCTCCTAGATTTTGTCCATCCAAAGCTGATCCTGCAGAAATTAGTGGAAGAGCTTCTGAAAAGAACTGAGGTCAGCTTAAAAAGAGAACTCTACTATTGGCATTCTTATTATGAAAGAAGACTACCACCCGGAACAACAGCTATACTAAAGTTAGAAGAATTTGTGGCCAAGTTCATGAGCATATACAGAAAAAGCTGCGGCGCTCAACAATATGTGTAG 2166 0.428 MDNNRFSSQKYTAKSGYEPSDTETEWQDVPRHERERKNIALDHQDAKAFNLISKSPLALHRRHQYNHSKFETEISSPSQPRRRQHLSKSPYKLRIAGDGDCGDTDDHLPSPSPIRGLNTRRNISPLPKPDGGRTVSPYSRKHHVDVERVVDKQNYKRSVTAPRLREQQRRTPSPMARGRVLNPPSVGEINEIIAEVKLSDDPNTLDESMISTTESIQPGDLFFSRESSALQGKKPSLLPQKLQQYGYYSPSPAAAAMNPHIRGLPASSLEDESNGDGMNMRGMSRSSSAVTSRKGGSSMASDGSVKTTDSMRKFTSNRKKSQKDASWFSCMRTGNCRTSMKSPERKRPIEASFIGRAIVVETLPQFWADKHQPASLNGFICNKQEAQLLKELMSEGSCPHILLKGPSGSGKRELAMTLLREIYGDACCNMSHELRSFPIQDKRPIKVCVSIPSSAHHMELNVSMEPNAKYALLGLIKEISNIYAMTPEVSNVNFKPDYKVIVLYGVDKAVENIQHMIKWIIDRYSDICKLVLCCEDDASIVEPVKNRFKIIKVDAPQTHQIAEVLIQIAKKEEIDVSHNFAAKIAIKSRQNLRKAIMALEACKAHNYPFSEEQPVPIGWEDMVIEVAAEILADPSFSRLMSIRGKFQMLLLDFVHPKLILQKLVEELLKRTEVSLKRELYYWHSYYERRLPPGTTAILKLEEFVAKFMSIYRKSCGAQQYV 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90741g00014 721 Gene3D - 618 711 - -
Stsc90741g00014 721 MobiDBLite consensus disorder prediction 24 42 - -
Stsc90741g00014 721 MobiDBLite consensus disorder prediction 1 42 - -
Stsc90741g00014 721 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 364 704 - -
Stsc90741g00014 721 FunFam replication factor C subunit 3 557 615 - -
Stsc90741g00014 721 MobiDBLite consensus disorder prediction 1 22 - -
Stsc90741g00014 721 MobiDBLite consensus disorder prediction 69 88 - -
Stsc90741g00014 721 Gene3D - 558 615 - -
Stsc90741g00014 721 MobiDBLite consensus disorder prediction 279 311 - -
Stsc90741g00014 721 MobiDBLite consensus disorder prediction 93 138 - -
Stsc90741g00014 721 FunFam Replication factor C subunit 3 365 556 - -
Stsc90741g00014 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 608 IPR027417 -
Stsc90741g00014 721 MobiDBLite consensus disorder prediction 70 84 - -
Stsc90741g00014 721 MobiDBLite consensus disorder prediction 161 183 - -
Stsc90741g00014 721 Gene3D - 365 556 IPR027417 -
Stsc90741g00014 721 SUPERFAMILY post-AAA+ oligomerization domain-like 618 711 IPR008921 GO:0003677|GO:0006260
Stsc90741g00014 721 MobiDBLite consensus disorder prediction 267 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90741g00014 Stsc-Chr90741 57263 60736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90741g00014 366 712 Core DNA Replication Machinery Family AT5G27740 39.255 4.02e-80 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90741g00014 K10756 - gmx:100795321 930.628