Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90741g00008 ATGAATGATCTGATGACGAAATCGTTCTTAAGTTATGTTGAACTGAAGAAACAGGTCATGAAGGACCTTGAAATTGAACGTGATATTGAAGCAGGGCAACTCAACCCCACACAACAACAAGATCCTAACCTCACTCAGTTCTTCCAAGAAGTGGATGCAATCAAGGTTGAAATGGAAGAGATCACCAATCTCTTATTTGATCTTCAGCAACTCAATGAAGAGGCAAAGTCCACACACAGTCCAAAAATCCTCCGTGGACTAAGAGACCGGATGGAATCTGACATGGTTGCGGTGCTTCGCAAGGCCAAGATCATCAAGGCAAGGCTTGAGTCCTTGAGGGACAAGATACTGTCTGATCATAAGGAGGATTTGAAGAGAAGGTACTATAGCGCGACTGGCGAGGTTCCGAGTGAGGAGGTCATGGACAAGATGATCTCAGGGAGTCTCAAAGTTGAGTTTTTGGCTGGCAAAACAGATGCTGACATGGGAACTCAGGTTAGGCATGAGGCTGTGATGGATATTCAGAGGAGTTTGAACAAGCTTCACCAAGTGTTTCTTGATATGGCTATTCTGGTTGAGACACAAGGGGAGAAATTGGACAACATTGAAGATAATATGGCCAGTGCTGGTAACTACATCCATGGTGGAACTAATAGTCTTTACTATGCCAATCAGATGAAGAAGAAGAACCAGAAATGGTGGTGCTGGGTTTGTGCTCTTGGGATGATTGTGCTGTTGGTTTGCTTCATTGCAATGTTGACTTCTTGA 768 0.4401 MNDLMTKSFLSYVELKKQVMKDLEIERDIEAGQLNPTQQQDPNLTQFFQEVDAIKVEMEEITNLLFDLQQLNEEAKSTHSPKILRGLRDRMESDMVAVLRKAKIIKARLESLRDKILSDHKEDLKRRYYSATGEVPSEEVMDKMISGSLKVEFLAGKTDADMGTQVRHEAVMDIQRSLNKLHQVFLDMAILVETQGEKLDNIEDNMASAGNYIHGGTNSLYYANQMKKKNQKWWCWVCALGMIVLLVCFIAMLTS 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90741g00008 255 Gene3D - 157 254 - -
Stsc90741g00008 255 SMART tSNARE_6 156 223 IPR000727 -
Stsc90741g00008 255 CDD SNARE_syntaxin1-like 165 220 - -
Stsc90741g00008 255 Gene3D - 39 156 - -
Stsc90741g00008 255 PANTHER SYNTAXIN 42 242 IPR045242 -
Stsc90741g00008 255 SMART SynN_4 39 167 IPR006011 GO:0016020
Stsc90741g00008 255 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 161 223 IPR000727 -
Stsc90741g00008 255 FunFam Syntaxin 132 156 254 - -
Stsc90741g00008 255 SUPERFAMILY t-snare proteins 41 216 IPR010989 GO:0016020|GO:0016192
Stsc90741g00008 255 Coils Coil 54 78 - -
Stsc90741g00008 255 Pfam Syntaxin 111 196 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90741g00008 Stsc-Chr90741 28625 29535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90741g00008 1 255 SNARE and Associated Proteins AT2G18260 51.634 9.16e-104 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90741g00008 K08486 - gmx:112997615 404.445